View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20918_low_1 (Length: 439)
Name: NF20918_low_1
Description: NF20918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20918_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 8331855 - 8332263
Alignment:
| Q |
18 |
aaaagacccaaagaatgtctaaagaaaatgatatctcaaagacttctgccccattcacctttttaacctttcattttcaccaatcatgaaggcatttttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8331855 |
aaaagacccaaagaatgtctaaagaaaatgatatctcaaagacttctgccccattcacctttttaacctttcattttcaccaatcatgaaggcatttttg |
8331954 |
T |
|
| Q |
118 |
aacannnnnnnccttcagagtttcagtgtcagaaattttccatttatccatcgaaactctttaggactaaattgaccctttgggcacaaaaaagctgcac |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8331955 |
aacatttttttccttcagagtttcagtgtcagaaattttccatttatccatcgaaactctttaggactaaattgaccatttgggcacaaaaaagctgcac |
8332054 |
T |
|
| Q |
218 |
taaacgacaagcattttctgctgtataacgttacttagtatttattctcttttgtttcttcataagaccaccttcaccactccttcccttcccttctcaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8332055 |
taaacgacaagcattttctgctgtataacgttacttagtatttattctcttttgtttcttcataagaccaccttcaccactccttcccttcccttctcaa |
8332154 |
T |
|
| Q |
318 |
taaaaacagagaaaataaaatgcaataagcatataaattcaatgaagggtagtgaaactgaaatctctctcaaaccatcccaaaaaactatgtcttcatc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8332155 |
taaaaacagagaaaataaaatgcaataagcatataaattcaatgaagggtagtgaaactgaaatctctctcaaaccatcccaaaaaactatgtcttcatc |
8332254 |
T |
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| Q |
418 |
ttcttcttc |
426 |
Q |
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| T |
8332255 |
ttcttcttc |
8332263 |
T |
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