View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20918_low_2 (Length: 329)
Name: NF20918_low_2
Description: NF20918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20918_low_2 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 307
Target Start/End: Original strand, 13660500 - 13660799
Alignment:
| Q |
8 |
cgaagaatatgtaaattcatttagactgaaagccgtgaataacaatgattctatatcatattccgaggttgatgtccattcaagtgaagatattcccaca |
107 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13660500 |
cgaagaatatgtaaattcatttagactgaaagcagtgaataacaatgattctatatcatattcggaggttgatgtccattcaagtgaagatattcccaca |
13660599 |
T |
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| Q |
108 |
atcctcaatgatttagacaaatttggttatgatttatacatagttggacaagggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtg |
207 |
Q |
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| T |
13660600 |
atcctcaatgatttagacaaatttggttatgatttatacatagttggacaagggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtg |
13660699 |
T |
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| Q |
208 |
attgtccagaacttggagttatcggggatatgttggcatcaaacaattttagttcgggttcatcggtgctcgttgtgcaacaatatgggtacggaggaat |
307 |
Q |
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| T |
13660700 |
attgtccagaacttggagttatcggggatatgttggcatcaaacaattttagttcgggttcgtctgtgctcgttgtgcaacaatatgggtacggaggaat |
13660799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 13653000 - 13653303
Alignment:
| Q |
8 |
cgaagaatatgtaaattcatttagactgaaagccgtgaataacaatgattctatatcatattccgaggttgatgtccattcaagtgaagatattcccaca |
107 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
13653000 |
cgaagaatatgtaaattcatttagactgaaagcagtgaataacaatgattttatatcctattcagaggttgatgtccattcaggtgaagatattcccaca |
13653099 |
T |
|
| Q |
108 |
atcctcaatgatttagacaaatttggttatgatttatacatagttggacaagggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtg |
207 |
Q |
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| T |
13653100 |
atccttgatgatttagacaaatttggttgtgatttatacatagttggacaagggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtg |
13653199 |
T |
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| Q |
208 |
attgtccagaacttggagttatcggggatatgttggcatcaaacaattttagttcgggttcatcggtgctcgttgtgcaacaatatgggtacggaggaat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |
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| T |
13653200 |
attgtccagaacttggagttatcggggatatgttggcatcaaacaattttagttcgggttcatcagtgttagttgtgcaacaatatgggtacggaggaat |
13653299 |
T |
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| Q |
308 |
agtt |
311 |
Q |
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|||| |
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| T |
13653300 |
agtt |
13653303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 43 - 307
Target Start/End: Original strand, 28609164 - 28609428
Alignment:
| Q |
43 |
tgaataacaatgattctatatcatattccgaggttgatgtccattcaagtgaagatattcccacaatcctcaatgatttagacaaatttggttatgattt |
142 |
Q |
| |
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|||| ||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||| ||||||||| |||| ||| |||||| ||||| |
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| T |
28609164 |
tgaacaacaatgattctatatcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcgattt |
28609263 |
T |
|
| Q |
143 |
atacatagttggacaagggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttggagttatcggggatatgttg |
242 |
Q |
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| T |
28609264 |
atacatagttggacagggaaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatatttta |
28609363 |
T |
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| Q |
243 |
gcatcaaacaattttagttcgggttcatcggtgctcgttgtgcaacaatatgggtacggaggaat |
307 |
Q |
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| T |
28609364 |
gcatcaaacaattttggttcgggctcatcagtgctagttgtgcaacaatatgggtatggaggaat |
28609428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 26 - 307
Target Start/End: Complemental strand, 437757 - 437476
Alignment:
| Q |
26 |
atttagactgaaagccgtgaataacaatgattctatatcatattccgaggttgatgtccattcaagtgaagatattcccacaatcctcaatgatttagac |
125 |
Q |
| |
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||||||| ||| ||| |||| ||||||||||||||||| ||||| || ||| ||||||||||| |||||||||||||||||| ||||||||| |||| |
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| T |
437757 |
atttagattgacagcgatgaacaacaatgattctatatcttattcagaagttaatgtccattcaggtgaagatattcccacaaccctcaatgaactagaa |
437658 |
T |
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| Q |
126 |
aaatttggttatgatttatacatagttggacaagggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttggag |
225 |
Q |
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| T |
437657 |
aatttttattgcaatttatatatagttggacaagggaatcgtaggaacaatcgtgtctttttaaatttattggactggtgtgattgtccagaacttggag |
437558 |
T |
|
| Q |
226 |
ttatcggggatatgttggcatcaaacaattttagttcgggttcatcggtgctcgttgtgcaacaatatgggtacggaggaat |
307 |
Q |
| |
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|| | ||||| || ||||||||| | |||||| |||| | ||||| ||||| |||||||||||||||||||| || ||||| |
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| T |
437557 |
ttttaggggacattttggcatcagataattttgtttcgagatcatctgtgctagttgtgcaacaatatgggtatgggggaat |
437476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 295
Target Start/End: Original strand, 17597464 - 17597564
Alignment:
| Q |
195 |
ttggaatggtgtgattgtccagaacttggagttatcggggatatgttggcatcaaacaattttagttcgggttcatcggtgctcgttgtgcaacaatatg |
294 |
Q |
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||||||||| ||||||||| |||||||| ||||| || || ||||| |||||||| | |||| |||| |||||| | || |||||||||||||||| |
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| T |
17597464 |
ttggaatgggctgattgtcctgaacttggtgttattggtgacatgttagcatcaaatagttttggttcaaattcatcaatacttgttgtgcaacaatatg |
17597563 |
T |
|
| Q |
295 |
g |
295 |
Q |
| |
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| |
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|
| T |
17597564 |
g |
17597564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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