View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20919_high_10 (Length: 504)

Name: NF20919_high_10
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20919_high_10
NF20919_high_10
[»] chr3 (4 HSPs)
chr3 (50-487)||(798714-799146)
chr3 (31-134)||(25034956-25035059)
chr3 (23-133)||(44119095-44119205)
chr3 (156-388)||(25034697-25034929)
[»] chr7 (4 HSPs)
chr7 (24-134)||(7395288-7395398)
chr7 (31-129)||(19417738-19417836)
chr7 (75-130)||(29020804-29020859)
chr7 (36-101)||(27129079-27129144)
[»] chr4 (2 HSPs)
chr4 (31-120)||(10583607-10583696)
chr4 (191-330)||(10583387-10583527)
[»] chr1 (2 HSPs)
chr1 (40-134)||(20618151-20618244)
chr1 (286-379)||(12830986-12831079)
[»] scaffold0669 (1 HSPs)
scaffold0669 (23-127)||(4929-5034)
[»] chr2 (1 HSPs)
chr2 (23-126)||(15583117-15583220)
[»] chr5 (1 HSPs)
chr5 (23-130)||(18222032-18222139)
[»] chr6 (1 HSPs)
chr6 (297-432)||(24967968-24968105)


Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 50 - 487
Target Start/End: Original strand, 798714 - 799146
Alignment:
Q  50 cataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtgactcctannnnnnnnnnnn 149  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||                 
T  798714 cataactaacataagagacatcatagatgttggcgaagcatcaacaaacttgattccaagcttcctagccctccaatggtgactcctgctctctgtctct 798813  T
Q  150 nnnnnnattttggttcgattttaacaatggttaactttacagaaatgacatacacctttatttatacaggttcttaaatgttaacttctctaagaaaagt 249  Q
          |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||| |||||||    
T  798814 ctctctattttggttcgattttaacaattgttaactttacagaaatgacatacaccttaatttatacaggtacataaatgttaacttctctaggaaaagt 798913  T
Q  250 aaggcccgcctagccaactgaagtttcttctgtcgaggaaaaacaagttgtcttcaaatatttccttgaaccaccttagttcacctagaggaccaaatct 349  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  798914 aaggcccgcctagccaactgaagtttcttctgttgaggaaaaacaagttgtcttcagatattttcttgaaccaccttagttcacctagaggaccaaatct 799013  T
Q  350 cgcctagcaaaccgactttggcttttccttcaagaactccgttttggctcccattcacctagctcagctcgccaagtgaatcaggcttttcaccagatgt 449  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||     ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  799014 cgcctagcaaaccgactttggcttttccttcgaggactccgttttggc-----ttcacctagctcagctcgccaagcgaatcaagcttttcaccagatgt 799108  T
Q  450 ctcatatgatccgccctaacttctagcgcatgtgcttg 487  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  799109 ctcatatgatctgccctaacttctagcgcatgtgcttg 799146  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 25035059 - 25034956
Alignment:
Q  31 tttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtg 130  Q
    ||||||||||||| | |||||||||||||||| ||||  | ||||||||||||||||||||||||| ||||||||||| ||||||   ||||||||||||    
T  25035059 tttagttatccataaaatgcataactaacataggagagttgatagatgttggagaagcatcaacaagcttgattccaatcttcctaaacctccaatggtg 25034960  T
Q  131 actc 134  Q
    ||||    
T  25034959 actc 25034956  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 44119205 - 44119095
Alignment:
Q  23 aaagagattttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctc 122  Q
    ||||||| ||||||||  |||| |||| |||||||||||||||||  | ||||||||| | ||||| ||||||| ||||||| |||||||||| ||||||    
T  44119205 aaagagagtttagttactcatgctatgaataactaacataagagagttgatagatgtttgtgaagcgtcaacaagcttgatttcaagcttcctagccctc 44119106  T
Q  123 caatggtgact 133  Q
    |||||||||||    
T  44119105 caatggtgact 44119095  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 388
Target Start/End: Complemental strand, 25034929 - 25034697
Alignment:
Q  156 attttggttcgattttaacaatggttaactttacagaaatgacatacacctttatttatacaggttcttaaatgttaacttctctaagaaaagtaaggcc 255  Q
    ||||||||||| ||||| |||||| ||| | ||| ||| |||| ||||||| |||||||| ||||  | ||||||||| |||  || || ||||||||      
T  25034929 attttggttcggtttta-caatggctaattctactgaattgacctacacctctatttatagaggtcttgaaatgttaagttcgttaggagaagtaaggat 25034831  T
Q  256 cgcctagccaactgaagtttcttctgtcg-aggaaaaacaagttgtcttcaaatatttccttgaaccaccttagttcacctagaggaccaaatctcgcct 354  Q
    | | |||| ||  || ||||| ||| | | ||||||||  |||||| |||  |||||| | | |||||||||||||| | |||  ||||| ||||||| |    
T  25034830 cacttagcgaatcgaggtttcatctttgggaggaaaaatcagttgtgttcggatattttcataaaccaccttagttcgcttagcagaccacatctcgctt 25034731  T
Q  355 agcaaaccgactttggcttttccttcaagaactc 388  Q
    | ||||||  |||||||||||||||| |||||||    
T  25034730 atcaaaccacctttggcttttccttctagaactc 25034697  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 134
Target Start/End: Original strand, 7395288 - 7395398
Alignment:
Q  24 aagagattttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctcc 123  Q
    |||||| |||||||| |||||||||  | ||| |||||||||||  | |||| |||||||||||||||||||| |||||||||||| ||||| ||||| |    
T  7395288 aagagagtttagttacccatgatatatagaacgaacataagagagttgatagctgttggagaagcatcaacaagcttgattccaagattcctagcccttc 7395387  T
Q  124 aatggtgactc 134  Q
    |||||||||||    
T  7395388 aatggtgactc 7395398  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 19417738 - 19417836
Alignment:
Q  31 tttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggt 129  Q
    |||||||| |||| | ||| |||||||| ||||||||  | |||||||||||||| |||||||||| ||||| |||||||||  | ||||| |||||||    
T  19417738 tttagttacccataagatgtataactaatataagagagttgatagatgttggagatgcatcaacaagcttgaatccaagcttattagcccttcaatggt 19417836  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 29020804 - 29020859
Alignment:
Q  75 gatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtg 130  Q
    |||||| ||||||||| ||||| ||||  |||||||||||| ||||||||||||||    
T  29020804 gatgtttgagaagcatgaacaagcttgtctccaagcttcctagccctccaatggtg 29020859  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 27129079 - 27129144
Alignment:
Q  36 ttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttg 101  Q
    |||||||||| | |||||||||||| || |||  | ||||||||||  ||||||||||||||||||    
T  27129079 ttatccatgagaagcataactaacacaaaagagttgatagatgttgaggaagcatcaacaaacttg 27129144  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 10583696 - 10583607
Alignment:
Q  31 tttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccc 120  Q
    ||||| || |||||||||||||||||||||||||| |  | |||||| |||||||||||||| ||| |||||||||||||||||| ||||    
T  10583696 tttagatacccatgatatgcataactaacataagatagttgatagatattggagaagcatcaccaagcttgattccaagcttcctagccc 10583607  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 330
Target Start/End: Complemental strand, 10583527 - 10583387
Alignment:
Q  191 gaaatgacatacacctttatttatacaggttcttaaatgttaacttctctaagaaaagtaaggcccgcctagccaactgaagtttcttctgtcga-ggaa 289  Q
    |||||||| |||||||||||||||| ||||| | ||||||||| ||| ||| | ||| ||||||   |||||| ||  || ||||||||| | || ||||    
T  10583527 gaaatgacgtacacctttatttatagaggttttgaaatgttaagttcactatgcaaaataaggctttcctagcaaatcgaggtttcttctttggagggaa 10583428  T
Q  290 aaacaagttgtcttcaaatatttccttgaaccaccttagtt 330  Q
    |||| |||||||||   |||||| || ||||||| ||||||    
T  10583427 aaaccagttgtcttatgatattttctggaaccacgttagtt 10583387  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 20618151 - 20618244
Alignment:
Q  40 ccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtgactc 134  Q
    |||||||||||||||||||||| |||||  | |||||||||||||||||||   |||  |||||||||| |||||| ||||| ||||| ||||||    
T  20618151 ccatgatatgcataactaacat-agagagttgatagatgttggagaagcattgccaatattgattccaatcttcctagcccttcaatgatgactc 20618244  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 379
Target Start/End: Original strand, 12830986 - 12831079
Alignment:
Q  286 ggaaaaacaagttgtcttcaaatatttccttgaaccaccttagttcacctagaggaccaaatctcgcctagcaaaccgactttggcttttcctt 379  Q
    |||||||| ||||| ||||| |||||| ||||||||   ||||||| | ||  ||||||||||||||||||| ||  | || ||||||||||||    
T  12830986 ggaaaaaccagttgacttcagatattttcttgaaccgatttagttctcttaacggaccaaatctcgcctagcgaaatgtctctggcttttcctt 12831079  T

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Target: scaffold0669 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 4929 - 5034
Alignment:
Q  23 aaagagattttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagc-ttccttgccct 121  Q
    ||||||| ||||||||||||||| |||||| |||||||   ||||  | ||  ||||||||||||||||||||| ||||  ||||||| ||||| |||||    
T  4929 aaagagagtttagttatccatgagatgcatgactaacaagggagaattgatgaatgttggagaagcatcaacaagcttgtctccaagctttcctagccct 5028  T
Q  122 ccaatg 127  Q
    ||||||    
T  5029 ccaatg 5034  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 15583117 - 15583220
Alignment:
Q  23 aaagagattttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctc 122  Q
    ||||||| |||||||| | |||| ||| |||||||||| ||||    | |||||||||||| ||||||||||||  | || |||||||||||| ||||||    
T  15583117 aaagagagtttagttaccaatgaaatgtataactaacaaaagaaggttgatagatgttggataagcatcaacaagttggaatccaagcttcctagccctc 15583216  T
Q  123 caat 126  Q
    ||||    
T  15583217 caat 15583220  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 130
Target Start/End: Original strand, 18222032 - 18222139
Alignment:
Q  23 aaagagattttagttatccatgatatgcataactaacataagagacat-catagatgttggagaagcatcaacaaacttgattccaagcttccttgccct 121  Q
    ||||||| |||||||| |||||  || ||||||||||| |||| |||| ||||||||||||||||||||||| |  ||||| | |||||||| |  ||||    
T  18222032 aaagagagtttagttacccatggaattcataactaacaaaaga-acattcatagatgttggagaagcatcaatatgcttgaatacaagcttcatatccct 18222130  T
Q  122 ccaatggtg 130  Q
    || ||||||    
T  18222131 cctatggtg 18222139  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 432
Target Start/End: Original strand, 24967968 - 24968105
Alignment:
Q  297 ttgtcttcaaatatttccttgaaccaccttagttcacctagaggaccaaatctcgcctagcaaaccgactttggcttttccttcaagaa--ctccgtttt 394  Q
    ||||||||| |||||| |||||||| | ||||||| | |||| || ||||||| | ||| | || || ||||||||||| |||| | ||  |||  ||||    
T  24967968 ttgtcttcatatattttcttgaaccgcattagttcgcttagaagatcaaatctagtctaacgaaacgcctttggctttttcttctaaaactctctatttt 24968067  T
Q  395 ggctcccattcacctagctcagctcgccaagtgaatca 432  Q
    |||||  |||||||| |||||||||||| || ||||||    
T  24968068 ggctcttattcacctcgctcagctcgcctagcgaatca 24968105  T

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