View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_high_30 (Length: 370)
Name: NF20919_high_30
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 198 - 355
Target Start/End: Original strand, 7206886 - 7207044
Alignment:
| Q |
198 |
agtttccgctattaacgcggctttcagctttttaacatattttaattgctaaactgaataatgtcatctccattcccattaaatacataaatatttccac |
297 |
Q |
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| T |
7206886 |
agtttgcgctattaacgcggctttcagctttttaacatattttaattgctaaactgaataatgtcatctccattcccattaaatacataaatatttccac |
7206985 |
T |
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| Q |
298 |
actaccttctgatctaataaagatctttgctttctagatc-tttatgttttttgaaact |
355 |
Q |
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| T |
7206986 |
actaccttctgatcgaataaagatctttgctttctagatcttttatgttttttgaaact |
7207044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 218 - 355
Target Start/End: Original strand, 7200349 - 7200485
Alignment:
| Q |
218 |
ctttcagctttttaacatattttaattgctaaactgaataatgtcatctccattcccattaaatacataaatatttccacactaccttctgatctaataa |
317 |
Q |
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| T |
7200349 |
ctttcatctttctaacatattttaattgctaaactgaataaggtcatctccattcccattaaatatataaatatttccacactaccttct-atccaataa |
7200447 |
T |
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| Q |
318 |
agatctttgctttctagatctttatgttttttgaaact |
355 |
Q |
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| T |
7200448 |
agatctttgctttctagatctttatgtttttcgaaact |
7200485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 7200190 - 7200324
Alignment:
| Q |
82 |
tggttaggatatgagaactacatatgtcatatctttagacgacgtgggactaaacac-atccctcacacccaacagaatgaaggtgctgcagtctataat |
180 |
Q |
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| T |
7200190 |
tggttaggatatgagaactacatatgtcatatctttagacaacgtgggactaaacacaaaccgtcattcccaacagaatgaaggtgctgcagacta---- |
7200285 |
T |
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| Q |
181 |
taatgtaggcaacccaaagtttccgctattaacgcggct |
219 |
Q |
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| T |
7200286 |
caacataggcaacccaaagtttccgctattaaagcggct |
7200324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 7206832 - 7206881
Alignment:
| Q |
11 |
atgaaaagatgatagatcatacacactgagctttgatctcagagcatcaa |
60 |
Q |
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| T |
7206832 |
atgaaaagatgatagatcatacacactgagctttgatctcagagcttcaa |
7206881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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