View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_high_35 (Length: 348)
Name: NF20919_high_35
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 330
Target Start/End: Complemental strand, 32606174 - 32605855
Alignment:
| Q |
11 |
aataagattcccattataagaaactgcattttccaaactaacaccgggttgacccgggtcacccaaagatggccaacccgtttcaccaacaaccaaatcc |
110 |
Q |
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| T |
32606174 |
aataagattcccattataagaaactgcattttccaaactaacaccgggttgacccgggtcacccaaagatggccaacccgtttcaccaacaaccaaatcc |
32606075 |
T |
|
| Q |
111 |
acgtcaccataacccactttcttcatcgccgaataaaccgcatccatttgagcatcaaacatgttcgtgtagtttattccagtagctttatcaaaaacgc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32606074 |
acgtcaccataacccactttcttcatcgccgaataaaccgcatccatttgagcatcaaacatgttcgtgtagtttattccagtagctttatcaaaaacgc |
32605975 |
T |
|
| Q |
211 |
caccgtttggtttaaacaaagcgtagttaagtgcgtcgggttggtttgatgaaataccgaaaaacggatacgggttaaccatgaaaggtgatttagtttc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32605974 |
caccgtttggtttaaacaaagcgtagttaagtgcgtcgggttggtttgatgaaataccgaaaaacggatacgggttaatcatgaaaggtgatttagtttc |
32605875 |
T |
|
| Q |
311 |
acggtggaatttgagtatgg |
330 |
Q |
| |
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|||||||||||||||||||| |
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| T |
32605874 |
acggtggaatttgagtatgg |
32605855 |
T |
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