View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20919_high_37 (Length: 333)

Name: NF20919_high_37
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20919_high_37
NF20919_high_37
[»] chr2 (2 HSPs)
chr2 (143-333)||(19706103-19706293)
chr2 (18-79)||(19705978-19706039)
[»] chr1 (4 HSPs)
chr1 (143-330)||(22009765-22009952)
chr1 (143-330)||(22003494-22003681)
chr1 (18-77)||(22003369-22003428)
chr1 (18-77)||(22009640-22009699)
[»] chr8 (4 HSPs)
chr8 (143-330)||(19464775-19464962)
chr8 (143-330)||(19562455-19562642)
chr8 (18-77)||(19464650-19464709)
chr8 (18-77)||(19562330-19562389)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 143 - 333
Target Start/End: Original strand, 19706103 - 19706293
Alignment:
Q  143 gtcagccttgtcaaaatgggggtgcggctgttgaacctacttgtgttctataaggtcttgatcttgttttttgatgtgttccgtctatatgtggcacctc 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19706103 gtcagccttgtcaaaatgggggtgcggctgttgaacctacttgtgttctataaggtcttgatcttgttttttgatgtgttccgtttatatgtggcacctc 19706202  T
Q  243 tatttgtatgtcttgcattttgccagtttgtgtgtcttgtacgagctatgcatgaatacaacctctttgattaaaaaagaaaatattccat 333  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19706203 tatttgtatgtcttgcattttgctagtttatgtgtcttgtacgagctatgcatgaatacaacctcgttgattaaaaaagaaaatattccat 19706293  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 19705978 - 19706039
Alignment:
Q  18 ctttagttcggtgataaccaacattttggatacttttgaggtctgttttggggaagttagta 79  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19705978 ctttagttcagtgataaccaacgttttggatacttttgaggtctgttttggggaagttagta 19706039  T

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Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 143 - 330
Target Start/End: Original strand, 22009765 - 22009952
Alignment:
Q  143 gtcagccttgtcaaaatgggggtgcggctgttgaacctacttgtgttctataaggtcttgatcttgttttttgatgtgttccgtctatatgtggcacctc 242  Q
    |||||||||||||||||||||||| ||||||||||  |  | |||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||    
T  22009765 gtcagccttgtcaaaatgggggtgtggctgttgaatttgttggtgttctatagggtgttgatcttgttttttgaggtgttccgtctatatgtggcacctc 22009864  T
Q  243 tatttgtatgtcttgcattttgccagtttgtgtgtcttgtacgagctatgcatgaatacaacctctttgattaaaaaagaaaatattc 330  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||||||    
T  22009865 tatttgtatgtcttgcattttgctagtttgtgtgtcttgtacgagctatgcattaatataatctcgttgattaaaaaagaaaatattc 22009952  T

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Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 143 - 330
Target Start/End: Original strand, 22003494 - 22003681
Alignment:
Q  143 gtcagccttgtcaaaatgggggtgcggctgttgaacctacttgtgttctataaggtcttgatcttgttttttgatgtgttccgtctatatgtggcacctc 242  Q
    |||||||||||||||||||||||| ||||||||||  |  | |||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||    
T  22003494 gtcagccttgtcaaaatgggggtgtggctgttgaatttgttggtgttctatagggtgttgatcttgttttttgaggtgttccgtctatatgtggcacctc 22003593  T
Q  243 tatttgtatgtcttgcattttgccagtttgtgtgtcttgtacgagctatgcatgaatacaacctctttgattaaaaaagaaaatattc 330  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| || ||| || |||||||||||||||||||    
T  22003594 tatttgtatgtcttgcattttgctagtttgtgtgtcttgtacgagctatgcattaatataaactcgttaattaaaaaagaaaatattc 22003681  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 22003369 - 22003428
Alignment:
Q  18 ctttagttcggtgataaccaacattttggatacttttgaggtctgttttggggaagttag 77  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  22003369 ctttagttcggtgataaccaatgttttggatacttttgaggtctgttttggagaagttag 22003428  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 22009640 - 22009699
Alignment:
Q  18 ctttagttcggtgataaccaacattttggatacttttgaggtctgttttggggaagttag 77  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  22009640 ctttagttcggtgataaccaatgttttggatacttttgaggtctgttttggagaagttag 22009699  T

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Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 143 - 330
Target Start/End: Original strand, 19464775 - 19464962
Alignment:
Q  143 gtcagccttgtcaaaatgggggtgcggctgttgaacctacttgtgttctataaggtcttgatcttgttttttgatgtgttccgtctatatgtggcacctc 242  Q
    |||||||||||||||||||||||| ||||||||||  |  | |||||||||| ||| |||||||| |||||||| |||||||||||||||||||||||||    
T  19464775 gtcagccttgtcaaaatgggggtgtggctgttgaatttgttggtgttctatagggtgttgatcttattttttgaggtgttccgtctatatgtggcacctc 19464874  T
Q  243 tatttgtatgtcttgcattttgccagtttgtgtgtcttgtacgagctatgcatgaatacaacctctttgattaaaaaagaaaatattc 330  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| || |||||||||||||||||||    
T  19464875 tatttgtatgtcttgcattttgctagtttgtgtgtcttgtacgagctatgcattaatataacctcgttaattaaaaaagaaaatattc 19464962  T

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Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 143 - 330
Target Start/End: Original strand, 19562455 - 19562642
Alignment:
Q  143 gtcagccttgtcaaaatgggggtgcggctgttgaacctacttgtgttctataaggtcttgatcttgttttttgatgtgttccgtctatatgtggcacctc 242  Q
    |||||||||||||||||||||||| ||||||||||  |  | |||||||||| ||| |||||||| |||||||| |||||||||||||||||||||||||    
T  19562455 gtcagccttgtcaaaatgggggtgtggctgttgaatttgttggtgttctatagggtgttgatcttattttttgaggtgttccgtctatatgtggcacctc 19562554  T
Q  243 tatttgtatgtcttgcattttgccagtttgtgtgtcttgtacgagctatgcatgaatacaacctctttgattaaaaaagaaaatattc 330  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| || |||||||||||||||||||    
T  19562555 tatttgtatgtcttgcattttgctagtttgtgtgtcttgtacgagctatgcattaatataacctcgttaattaaaaaagaaaatattc 19562642  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 19464650 - 19464709
Alignment:
Q  18 ctttagttcggtgataaccaacattttggatacttttgaggtctgttttggggaagttag 77  Q
    |||||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||||    
T  19464650 ctttagttcggtgataaccaatgttttagatacttttgaggtctgttttggagaagttag 19464709  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 19562330 - 19562389
Alignment:
Q  18 ctttagttcggtgataaccaacattttggatacttttgaggtctgttttggggaagttag 77  Q
    |||||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||||    
T  19562330 ctttagttcggtgataaccaatgttttagatacttttgaggtctgttttggagaagttag 19562389  T

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