View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_high_39 (Length: 322)
Name: NF20919_high_39
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_high_39 |
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| [»] scaffold0451 (1 HSPs) |
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| [»] scaffold0638 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 38260124 - 38259825
Alignment:
| Q |
18 |
tatattgtttccttcaaacctctctggccaaaacttttctggatcagtccaagcatttggatctctcataattgaccatgcattcacaatgacccttgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38260124 |
tatattgtttccttcaaacctctctggccaaaacttttctggatcagtccaagcatttggatctctcataattgaccatgcattcacaatgacccttgat |
38260025 |
T |
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| Q |
118 |
tttttaggtatgaataagtcttcaaccatgcaatcttccaaggattggtatggaattaataagggtgccactggatggagcctaagactttcttttatta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38260024 |
tttttaggtatgaataagtcttcaaccatgcaatcttccaaggattggtatggaattaataagggtgccactggatggagcctaagactttcttttatta |
38259925 |
T |
|
| Q |
218 |
ccatttccaaatacttcaacttgtccaaatctgattcttccacttttctcttcatacccaccatagtttccaactccttttgaacatttttcatctctct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
38259924 |
ccatttccaaatacttcaacttgtccaaatctgattcttccacttttctcttcatacccaccacagtttccaactccttttgaacatttttcatcactct |
38259825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 38263095 - 38262801
Alignment:
| Q |
18 |
tatattgtttccttcaaacctctctggccaaaacttttctggatcagtccaagcatttggatctctcataattgaccatgcattcacaatgacccttgat |
117 |
Q |
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||||||| || ||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| | |
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| T |
38263095 |
tatattgctttcttcaaatctctctggccaaaacatttctggatcagtccaagcatttgggtctctcataactgaccatgaattcacaatgacccttgct |
38262996 |
T |
|
| Q |
118 |
tttttaggtat-gaataagtcttcaaccatgcaatcttccaaggattggtatggaattaataagggtgccactggatggagcctaagactttcttttatt |
216 |
Q |
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||||||||||| ||| || ||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38262995 |
tttttaggtatagaaaaaatcttcaaccatgcaatcttccaaggattgatgtggtattaataagggtgccactggatggagcctaaggctttcttttata |
38262896 |
T |
|
| Q |
217 |
accatttccaaatacttcaacttgtccaaatctgattcttccacttttctcttcatacccaccatagtttccaactccttttgaacatttttcat |
311 |
Q |
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|||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||| |
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| T |
38262895 |
gccatatccaaatactccaacttttccaaatctgattcttccacttttctcttcatacccaccacagtttccaactcgttttgaacttttttcat |
38262801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 22 - 311
Target Start/End: Complemental strand, 27413467 - 27413178
Alignment:
| Q |
22 |
ttgtttccttcaaacctctctggccaaaacttttctggatcagtccaagcatttggatctctcataattgaccatgcattcacaatgacccttgattttt |
121 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| || || |||||||||| |||||||||||||||||||| |||| |||||||||||| |||||| |||| |
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| T |
27413467 |
ttgtttccttcaaatctctcaggccaaaacttctcagggtcagtccaagaatttggatctctcataattgcccatccattcacaatgatccttgaatttt |
27413368 |
T |
|
| Q |
122 |
taggtatgaataagtcttcaaccatgcaatcttccaaggattggtatggaattaataagggtgccactggatggagcctaagactttcttttattaccat |
221 |
Q |
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|||||||||| || |||||||| |||||||||||| |||||||| ||| | ||||| |||| |||||||||| | |||||| ||||||||||| ||||| |
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| T |
27413367 |
taggtatgaaaaaatcttcaacagtgcaatcttccatggattggtgtggtactaataggggtaccactggatgaatcctaaggctttcttttataaccat |
27413268 |
T |
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| Q |
222 |
ttccaaatacttcaacttgtccaaatctgattcttccacttttctcttcatacccaccatagtttccaactccttttgaacatttttcat |
311 |
Q |
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| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| || |||||||| |
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| T |
27413267 |
gttcaaatactccaacttgtccaaatctgattcctccacttttctcttcatacccaccactgtttccaactctttttgcacctttttcat |
27413178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 22 - 311
Target Start/End: Original strand, 6969 - 7258
Alignment:
| Q |
22 |
ttgtttccttcaaacctctctggccaaaacttttctggatcagtccaagcatttggatctctcataattgaccatgcattcacaatgacccttgattttt |
121 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| || || |||||||||| |||||||||||||||||||| |||||||||||| |||| |||||| |||| |
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| T |
6969 |
ttgtttccttcaaatctctcaggccaaaacttctcagggtcagtccaagaatttggatctctcataattgcccatgcattcaccatgatccttgagtttt |
7068 |
T |
|
| Q |
122 |
taggtatgaataagtcttcaaccatgcaatcttccaaggattggtatggaattaataagggtgccactggatggagcctaagactttcttttattaccat |
221 |
Q |
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|||||||||| || |||||||| |||||||||||| |||||||| ||| | | ||| |||| |||||||||| | ||| || ||||||||||| ||||| |
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| T |
7069 |
taggtatgaaaaattcttcaacagtgcaatcttccatggattggtgtggtactgataggggtaccactggatgaaacctgaggctttcttttataaccat |
7168 |
T |
|
| Q |
222 |
ttccaaatacttcaacttgtccaaatctgattcttccacttttctcttcatacccaccatagtttccaactccttttgaacatttttcat |
311 |
Q |
| |
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| |||||||| |||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||| || |||||||| |
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| T |
7169 |
gttcaaatactccaacttctccaaatctgattcctccacttttctcttcatacccaccactatttccaactctttttgcacctttttcat |
7258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 22 - 317
Target Start/End: Complemental strand, 6912 - 6617
Alignment:
| Q |
22 |
ttgtttccttcaaacctctctggccaaaacttttctggatcagtccaagcatttggatctctcataattgaccatgcattcacaatgacccttgattttt |
121 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| || ||||||||||||| |||||||||||||||||||| |||||||||||||| || | |||| |||| |
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| T |
6912 |
ttgtttccttcaaatctctcaggccaaaacttctcaggatcagtccaagaatttggatctctcataattgcccatgcattcacaacgatcattgagtttt |
6813 |
T |
|
| Q |
122 |
taggtatgaataagtcttcaaccatgcaatcttccaaggattggtatggaattaataagggtgccactggatggagcctaagactttcttttattaccat |
221 |
Q |
| |
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||||||| || || |||||||| |||||||||||| |||||||| ||| | ||||| |||| |||||||||| | ||| || ||||||||||| || || |
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| T |
6812 |
taggtataaaaaattcttcaacggtgcaatcttccatggattggtgtggtactaataggggtaccactggatgaatcctgaggctttcttttataacgat |
6713 |
T |
|
| Q |
222 |
ttccaaatacttcaacttgtccaaatctgattcttccacttttctcttcatacccaccatagtttccaactccttttgaacatttttcatctctct |
317 |
Q |
| |
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| || ||||| ||||||||||||||| ||||| || |||||||||||||||||||||| ||||||||||| ||||| || ||||||||| |||| |
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| T |
6712 |
gttcagatactccaacttgtccaaatcagattcctctacttttctcttcatacccaccactgtttccaactctttttgcacctttttcatcactct |
6617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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