View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_high_41 (Length: 300)
Name: NF20919_high_41
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_high_41 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 6 - 284
Target Start/End: Complemental strand, 42223121 - 42222842
Alignment:
| Q |
6 |
agtgagaagaatggaaaggaaaatggaaccatttcaagtcagagtaaggttcagaagaatagaattgatatgcccattgtaaaacatccagcggccaccc |
105 |
Q |
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| T |
42223121 |
agtgaaaagaatggaaaggaaaatggaaacatttcaagtcagagtaaggttcagaagaatagaattgatacgcccattgtaaaacatccaacggccaccc |
42223022 |
T |
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| Q |
106 |
aagggcttaaacgttcacctgcgcaataacatgtaaactaaagtagtcaataaatctcaaatagaggaaaagccaaactagaagaccacaatgcaactcc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42223021 |
aagggcttaaacgttcacctgcgcaataacatgtaaactaaagtagtcaataaatctcgaatagaggaaaagccaaactagaagaccacaatgcaactcc |
42222922 |
T |
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| Q |
206 |
cttcgcc-aaaagaagaccactccaaagtacgagcgaaagacaaagtcataaaaccaaactagaattttgctttctaatt |
284 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42222921 |
cttcgccaaaaagaagaccactccaaagtacgagcgaaagataaagtcataaaaccaaactagaattttgctttctaatt |
42222842 |
T |
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