View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_high_42 (Length: 291)
Name: NF20919_high_42
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_high_42 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 38551136 - 38550913
Alignment:
| Q |
1 |
ataatactaatataataattggtgcgtgattcacgtggaatagtgactgttttttatggatgttttatttattgaaagatatataaatacaaataggcaa |
100 |
Q |
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| T |
38551136 |
ataatactaatataataattggtgcgtgattcacgtggaatagtgactgttttttatggatgttttatttattgaaagatatataaatacaaataggcaa |
38551037 |
T |
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| Q |
101 |
cgtgtcgaaaaaggaatgaataatttttctgaggctttatcgattgcaataccagaatgttcggttgctggaactaagaacaaagtgtgaaaagagcaac |
200 |
Q |
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| T |
38551036 |
cgtgtcgaaaaaggaatgaataatttttctgaggctttatcgattgcaataccagaatgttcggttgccggaactaagaacaaagtgtgaaaagagaaac |
38550937 |
T |
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| Q |
201 |
acggaaagaaagtttaagaattct |
224 |
Q |
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||| |||||||||||||||||||| |
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| T |
38550936 |
acgtaaagaaagtttaagaattct |
38550913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 38550896 - 38550861
Alignment:
| Q |
242 |
tgctatttctaaggagagataggcctagcgaaattt |
277 |
Q |
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||||||||||||||||||||||||||| |||||||| |
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| T |
38550896 |
tgctatttctaaggagagataggcctaacgaaattt |
38550861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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