View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20919_high_46 (Length: 285)

Name: NF20919_high_46
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20919_high_46
NF20919_high_46
[»] chr8 (2 HSPs)
chr8 (8-101)||(34429145-34429238)
chr8 (227-268)||(34428978-34429019)
[»] chr5 (1 HSPs)
chr5 (12-100)||(33738441-33738529)


Alignment Details
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 34429238 - 34429145
Alignment:
Q  8 agatgaagttgaaggagcgtcagacgttcgttgtcggatgttgaaaggaagtgaggggatggaagggaaggggaaagattcttgttcgggaaga 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34429238 agatgaagttgaaggagcgtcagacgttcgttgtcggatgttgaaaggaagtgaggggatggaagggaaggggaaagattcttgttcgggaaga 34429145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 34429019 - 34428978
Alignment:
Q  227 agttgaggaaatgtgagaaccgtcggaatctgaatcggaatc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  34429019 agttgaggaaatgtgagaaccgtcggaatctgaatcggaatc 34428978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 33738441 - 33738529
Alignment:
Q  12 gaagttgaaggagcgtcagacgttcgttgtcggatgttgaaaggaagtgaggggatggaagggaaggggaaagattcttgttcgggaag 100  Q
    ||||||||||||| | |||| |||||||||||||| |||||||| |  || |||||||| ||||  |||||||||| ||||| ||||||    
T  33738441 gaagttgaaggagtgccagaggttcgttgtcggattttgaaagggaaggatgggatggatgggagagggaaagattgttgtttgggaag 33738529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University