View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20919_high_52 (Length: 273)
Name: NF20919_high_52
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_high_52 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 55572783 - 55573040
Alignment:
| Q |
1 |
ctcttccacatattttcatgaaactccccttcattttgtttctattttctttatacaatgaaatttcatcatccttttacgttcctttctgtctctctag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55572783 |
ctcttccacatattttcatgaaactccccttcattttgtttctattttctttatacaatgaaatttcatcatccttttacgttcctttctgtctctctag |
55572882 |
T |
|
| Q |
101 |
ttgttatgtgctgtaatggtttttatctttcacaactttgatgaaccaagtgtcataaattgcatgacatggttccataaatataaaaaggtcttgtttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
55572883 |
ttgttatgtgctgtaatggtttttatctttcacaactttgatgaaccaagtgtcataaattgcatgacatggttccataaagataaaaaggtcttgtttg |
55572982 |
T |
|
| Q |
201 |
aattcataaatgaatcattttgatacatgcttttcaattttcatcgttggagcctatg |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55572983 |
aattcataaatgaatcattttgatacatgcttttcaattttcatcgttggagcctatg |
55573040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 33035433 - 33035506
Alignment:
| Q |
185 |
aaaaaggtcttgtttgaattcataaatgaatcattttgatacatgcttttcaattttcatcgttggagcctatg |
258 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| |
|
|
| T |
33035433 |
aaaagggtcttgtttgaattcataaatgaatcattttgatacatgctcttcaattttggtcgtaggagcctatg |
33035506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 12080703 - 12080759
Alignment:
| Q |
185 |
aaaaaggtcttgtttgaattcataaatgaatcattttgatacatgcttttcaatttt |
241 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
12080703 |
aaaagggtcttttttgaattcataaatgaatcatcttgatacatgctcttcaatttt |
12080759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University