View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_high_54 (Length: 269)
Name: NF20919_high_54
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_high_54 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 3949358 - 3949115
Alignment:
| Q |
10 |
gacacgtcagcaccgggagaaaattacgaaaaatgataaaattaaatgtattcacacatgtccgtccatatcaaacaccggacacgccttctatcagaag |
109 |
Q |
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| T |
3949358 |
gacacatcagcaccgggagaaaattacgaaaaatgataaaattaaatgtattcacacatgtccgtccatatcaaacaccggacacgccttctatcagaag |
3949259 |
T |
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| Q |
110 |
tttcggtggtgcaagtgttggctaaaaaacaaattaacacatactcacatagatatcattaagtgcgtatctcctccgaatattatacaaaactcccggt |
209 |
Q |
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| T |
3949258 |
tttcggtggtgcaagtgttggctaaaaaacaaattaacacatactcacatagatatcattaagtgcgtatctcctccgaatattatacaaaactcccggt |
3949159 |
T |
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| Q |
210 |
tcattcaagtaagtcaacctcgtcatatcttcaaatccaccaag |
253 |
Q |
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| T |
3949158 |
tcattcaagtaagtcaacctcgtcatatcttcaaatccaccaag |
3949115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 48492460 - 48492387
Alignment:
| Q |
177 |
tatctcctccgaatattatacaaaactcccggttcattcaagtaagtcaacctcgtcatatcttcaaatccacc |
250 |
Q |
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| T |
48492460 |
tatcttctccgaatattatacaaaacccctggttcattcaaataaatcaatctcgtcatatcttcaactccacc |
48492387 |
T |
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