View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_high_57 (Length: 254)
Name: NF20919_high_57
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_high_57 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 8398229 - 8398465
Alignment:
| Q |
1 |
cctttattggtcatggcaatagcatacctgagacaggagtgaatctatttcatcaacaaaaattactgccggctgacgacaactggccactccaaagagg |
100 |
Q |
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|||||||||| |||| ||||||||||||||||||| ||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
8398229 |
cctttattggccatgacaatagcatacctgagacaagagcgaatctatttcatcaacaaatattactgctggctgacgacaactggccactccaaagagg |
8398328 |
T |
|
| Q |
101 |
gctcttactagcttttcaccttcaccatactgtaattatcatcagtacagatatcagttaatgagttgagaaagagtgcagaaactcatcctagataata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8398329 |
gctcttactagcttttcaccttcaccatactgtaattatcatcagtacaaatatcagttcatgagttgagaaagagtgcagaaactcatcctagataata |
8398428 |
T |
|
| Q |
201 |
ttttagataacggaatacgatgttttaagagaaatat |
237 |
Q |
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||| ||||||||||||||||||||||||||||||||| |
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| T |
8398429 |
tttgagataacggaatacgatgttttaagagaaatat |
8398465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 2 - 134
Target Start/End: Original strand, 8393076 - 8393208
Alignment:
| Q |
2 |
ctttattggtcatggcaatagcatacctgagacaggagtgaatctatttcatcaacaaaaattactgccggctgacgacaactggccactccaaagaggg |
101 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||| ||||||||| |
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| T |
8393076 |
ctttattggccatgacaatagcatacctgagacaggagtgaatctatttcatcaaaaaaaattactgctggctgacgacaactggctactgcaaagaggg |
8393175 |
T |
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| Q |
102 |
ctcttactagcttttcaccttcaccatactgta |
134 |
Q |
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| T |
8393176 |
ctgttactagcttttcaccttcaccaaactgta |
8393208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 8408916 - 8408775
Alignment:
| Q |
1 |
cctttattggtcatggcaatagcatacctgagacaggagtgaatctatttcatcaacaaaaattactgccggctgacgacaactggccactccaaagagg |
100 |
Q |
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|
|||||||||| |||| || ||||||||||||||| |||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||| |
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| T |
8408916 |
cctttattggccatgacattagcatacctgagac--gagtgaatctatttcatcaacaaatataactgctggctgacgacaactggccactccaaatagg |
8408819 |
T |
|
| Q |
101 |
gctcttactagcttttcaccttcaccatactgtaattatcatca |
144 |
Q |
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||| ||||||||||||||||||||||| ||||||| |||||||| |
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| T |
8408818 |
gctgttactagcttttcaccttcaccaaactgtaactatcatca |
8408775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 8424164 - 8424045
Alignment:
| Q |
22 |
gcatacctgagacaggagtgaatctatttcatcaacaaaaattactgccggctgacgacaactggccactccaaagagggctcttactagcttttcacct |
121 |
Q |
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|||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8424164 |
gcatacctgagacaagagcgagtctatttcatcaacaaaaattactgctggctgacgacaactggccactccaaagagggctctcactagcttttcacct |
8424065 |
T |
|
| Q |
122 |
tcaccatactgtaattatca |
141 |
Q |
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|||||| || ||||||||| |
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| T |
8424064 |
tcaccaatctataattatca |
8424045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 153 - 237
Target Start/End: Complemental strand, 8408731 - 8408647
Alignment:
| Q |
153 |
atcagttaatgagttgagaaagagtgcagaaactcatcctagataatattttagataacggaatacgatgttttaagagaaatat |
237 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8408731 |
atcagttcatgagttgagaaagagtgcagaaactcgtcctagataatattttagaaaacggaatacgatgttttaagagaaatat |
8408647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 8390193 - 8390234
Alignment:
| Q |
116 |
tcaccttcaccatactgtaattatcatcagtacagatatcag |
157 |
Q |
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| T |
8390193 |
tcaccatcaccacactgtaattatcatcagtacatatatcag |
8390234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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