View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20919_high_61 (Length: 250)
Name: NF20919_high_61
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_high_61 |
 | |
|
| [»] scaffold0169 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 14150225 - 14150464
Alignment:
| Q |
1 |
ttttttagagggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
14150225 |
ttttttagagggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaatacatggggaccagctgagaatatgg |
14150324 |
T |
|
| Q |
101 |
cctctttagcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttcgaaaaaagcattacggcatcttttgcattcctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14150325 |
cctctttagcaagagtatgagcgacctcattcgcttgtctccgactgaactcatccttagagttttcgaaaaaagcattacggcatcttttgcattcctc |
14150424 |
T |
|
| Q |
201 |
caaaattgaaccaaactcagacacatcattgctacctttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14150425 |
caaaattgaaccaaactcagacacatcattgctacctttg |
14150464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 32835946 - 32836004
Alignment:
| Q |
109 |
gcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttc |
167 |
Q |
| |
|
|||||| ||||||| |||||||||| ||||||||| || |||||| ||||||||||||| |
|
|
| T |
32835946 |
gcaagattatgagctacctcattcgtttgtctccgactaaactcaaccttagagttttc |
32836004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 26423406 - 26423368
Alignment:
| Q |
9 |
agggaaaatagcttatagcttttcattattaatcaaagt |
47 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26423406 |
agggaaagaagcttatagcttttcattattaatcaaagt |
26423368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 27951041 - 27950996
Alignment:
| Q |
21 |
ttatagcttttcattattaatcaaagtcaaaatacatagaggtaca |
66 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
27951041 |
ttatagtttttcattaataatcaaagtcgaaatacaaagaggtaca |
27950996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 3215217 - 3214985
Alignment:
| Q |
8 |
gagggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctcttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||| | |
|
|
| T |
3215217 |
gagggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacatcattaaagacatggggaccaactgaaaatatggcctctgt |
3215118 |
T |
|
| Q |
108 |
agcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttcgaaaaaagcattacggcatcttttgcattcctccaaaatt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3215117 |
agcaagagtatgagcgacctcattcgcttgtctcctactgaactccaccttagagttttcgaaaaaagcattacgacatcttttgcattcctccaaaatt |
3215018 |
T |
|
| Q |
208 |
gaaccaaactcagacacatcattgctacctttg |
240 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| |
|
|
| T |
3215017 |
gaaccaaactcggactcatcattgctacctttg |
3214985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 167
Target Start/End: Complemental strand, 12928810 - 12928645
Alignment:
| Q |
2 |
tttttagagggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggc |
101 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| || |||||||| |||||||| || | || | ||| |
|
|
| T |
12928810 |
ttttttgagggaaaatagcttatagcttttcattaataatcaaagtcgaaatacaaagaggtgcaacattaaagatatggggacaagttaagaaagtggt |
12928711 |
T |
|
| Q |
102 |
ctctttagcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttc |
167 |
Q |
| |
|
|||| || | ||| ||||| |||| |||||||||| |||| || ||||| ||||||||||||| |
|
|
| T |
12928710 |
ctctcgagataaagtgtgagcaaccttattcgcttgtttccgactaaactctaccttagagttttc |
12928645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 19477534 - 19477383
Alignment:
| Q |
1 |
ttttttagagggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatgg |
100 |
Q |
| |
|
|||||| || ||||||||||||||||||||| |||| |||||| ||| |||||| ||||||||| |||||| |||||||| |||| || | ||| |
|
|
| T |
19477534 |
tttttttgaaggaaaatagcttatagcttttgattaaaaatcaacgtcgtaatacaatgaggtacatcattaaaagtatggggactagctaagaaagtgg |
19477435 |
T |
|
| Q |
101 |
cctctttagcaagagtatgagcgacctcattcgcttgtctccggctgaactc |
152 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
19477434 |
cctctcgtgcaagagtgtgagcgacctcattcgcttgtctccgactaaactc |
19477383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 30091878 - 30092036
Alignment:
| Q |
9 |
agggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctcttta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||| || ||| || |||||||| |||| ||| || | || | || ||||| | |
|
|
| T |
30091878 |
agggaaaatagcttatagcttttcattaataatcaaagtcgaaatacaaagtggtgcaacattaaagatatggagactagttaagaaagtgtcctctcga |
30091977 |
T |
|
| Q |
109 |
gcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttc |
167 |
Q |
| |
|
|| ||||| ||||||||||| |||| ||||||||| || ||||| |||||| |||||| |
|
|
| T |
30091978 |
gctagagtgtgagcgacctccttcgattgtctccgactaaactctaccttagtgttttc |
30092036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 3158331 - 3158484
Alignment:
| Q |
14 |
aaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagcaag |
113 |
Q |
| |
|
||||| ||||||||| ||||| | ||||||||||| ||||||| |||||| || ||||||||| ||| ||| | || || | |||||||| |||||| |
|
|
| T |
3158331 |
aaatatcttatagctgttcatcaataatcaaagtcgaaatacaaagaggtgcagtattaaagatatgaagactaactaagaaagtggcctctcgagcaag |
3158430 |
T |
|
| Q |
114 |
agtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttc |
167 |
Q |
| |
|
|||||||| ||| ||| ||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
3158431 |
agtatgagtgacttcactcgcttgtctccgactaaactctaccttagagttttc |
3158484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 27804603 - 27804842
Alignment:
| Q |
1 |
ttttttagagggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatgg |
100 |
Q |
| |
|
|||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
27804603 |
tttttttgagtgaaaatagtttatagcttttcattattaatcaaagtcaaaatacatagaggtacatcattaaagacatggggaccagctgagaatatgg |
27804702 |
T |
|
| Q |
101 |
cctctttagcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttcgaaaaaagcattacggcatcttttgcattcctc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27804703 |
cctctctagcaagagtatgagcgacctcattcgcttgtttccgactgaactccaccttagagttttcgaaaaaaacattacggcatcttttgcattcctc |
27804802 |
T |
|
| Q |
201 |
caaaattgaaccaaactcagacacatcattgctacctttg |
240 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
27804803 |
caaaattgaaccaaactcggacacatcattactacttttg |
27804842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 28841444 - 28841515
Alignment:
| Q |
16 |
atagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggacca |
87 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||| | |||||| ||| |||||||| |||| ||||| |
|
|
| T |
28841444 |
atagcttatagtttttcattaataatcaaagtcaaaatataaagaggtgcatcattaaagatatggagacca |
28841515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 48207679 - 48207650
Alignment:
| Q |
18 |
agcttatagcttttcattattaatcaaagt |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
48207679 |
agcttatagcttttcattattaatcaaagt |
48207650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 5477258 - 5477477
Alignment:
| Q |
9 |
agggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctcttta |
108 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||| |||||| ||| |||||||||||||||||||||| || |||||| |
|
|
| T |
5477258 |
agggaaaataggttatagcttttcattattaatcaaagtcaagatacaaagaggtgcatcattaaagacatggggaccagctaagaatatggt------- |
5477350 |
T |
|
| Q |
109 |
gcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttcgaaaaaagcattacggcatcttttgcattcctccaaaattg |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || ||||| ||||||||||||| |||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
5477351 |
-----agtatgagtgacctcattcgcttgtctccgactaaactccaccttagagttttcaaaaaaagcattacgacatcttttgcatccctccaaaattg |
5477445 |
T |
|
| Q |
209 |
aaccaaactcagacacatcattgctacctttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5477446 |
aaccaaactcagacacatcattgctacctttg |
5477477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 12200308 - 12200438
Alignment:
| Q |
12 |
gaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagca |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| || |||| || || | || ||| |||||| ||||| |
|
|
| T |
12200308 |
gaaaatagcttatagcttttcattattaatcaatgtcaaaatactaagaggtacatcattaaaaacttgggaactaggtaagaataaagcctctctagca |
12200407 |
T |
|
| Q |
112 |
agagtatgagcgacctcattcgcttgtctcc |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
12200408 |
agagtatgagcgacctcattcgcttgtctcc |
12200438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 1512453 - 1512288
Alignment:
| Q |
1 |
ttttttagagggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatgg |
100 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||| |||||| ||| | ||||| |||||||||| || ||| | |||||||| |||| | | ||| |
|
|
| T |
1512453 |
tttttttgagagaaaatagcttatagcttttcattaaaaatcaa-gtcgagatacaaagaggtacatcatcaaaaatatggggactagctagggaaatga |
1512355 |
T |
|
| Q |
101 |
cctctttagcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttc |
167 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||| || ||||| ||||||| ||||| |
|
|
| T |
1512354 |
cctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttc |
1512288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 32542711 - 32542787
Alignment:
| Q |
12 |
gaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccag |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||| |||||||||||| ||||||| |
|
|
| T |
32542711 |
gaaaatagcttatagcttttcattattaatcaatgtcaaaatataaggaggtgcatcattaaagacatgaggaccag |
32542787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 13244068 - 13243992
Alignment:
| Q |
14 |
aaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagct |
90 |
Q |
| |
|
||||||||||||||||||||||| |||||| || ||||||| |||||||||| || ||||| |||||||| |||| |
|
|
| T |
13244068 |
aaatagcttatagcttttcattagatatcaaaatcgaaatacaaagaggtacatcatcaaagagatggggactagct |
13243992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 6643678 - 6643528
Alignment:
| Q |
1 |
ttttttagagggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatgg |
100 |
Q |
| |
|
||||||| || |||||||||| |||| ||||||||||||||||| ||| |||||| | |||| ||| ||||| |||||||||||| || | | | | |
|
|
| T |
6643678 |
ttttttatagagaaaatagctaataggttttcattattaatcaatatcataataca-aaaggtgcatctttaaatacatggggaccaactaaaaacaaga |
6643580 |
T |
|
| Q |
101 |
cctctttagcaagagtatgagcgacctcattcgcttgtctccggctgaactc |
152 |
Q |
| |
|
||| ||| |||||| |||||||||| | ||||| ||||||||| || ||||| |
|
|
| T |
6643579 |
cctttttggcaagaatatgagcgacttaattcgtttgtctccgactaaactc |
6643528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 7417855 - 7417934
Alignment:
| Q |
11 |
ggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagct |
90 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| ||| ||||||| ||| ||| | ||||||||| |||||||| |||| |
|
|
| T |
7417855 |
ggaaaatagcttatagtttgtcattattaatcattgtcgaaatacaaagatgtataatattaaagatatggggactagct |
7417934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 7413907 - 7413986
Alignment:
| Q |
11 |
ggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagct |
90 |
Q |
| |
|
||||||||||||||||||| || |||||||||| ||| ||||||| ||| || | ||||||||| |||||||| |||| |
|
|
| T |
7413907 |
ggaaaatagcttatagcttgtcgttattaatcattgtcgaaatacaaagatttataatattaaagatatggggactagct |
7413986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 7424977 - 7425048
Alignment:
| Q |
11 |
ggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggg |
82 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||| ||||||| ||| ||| | |||||||| ||||| |
|
|
| T |
7424977 |
ggaaaatagcttatagcttgtcattattaatcattgtcgaaatacaaagatgtataacattaaagatatggg |
7425048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 6816247 - 6816276
Alignment:
| Q |
18 |
agcttatagcttttcattattaatcaaagt |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6816247 |
agcttatagcttttcattattaatcaaagt |
6816276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 14489227 - 14489466
Alignment:
| Q |
1 |
ttttttagagggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatgg |
100 |
Q |
| |
|
|||||| ||| ||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| |||||| || ||||||| |||| || ||| | |
|
|
| T |
14489227 |
ttttttggagagaaaatagcttatagtttttcattattaatcaatgtcaaaatacaaagaggtacatcattaaaaacttggggactagctaagaataaag |
14489326 |
T |
|
| Q |
101 |
cctctttagcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttcgaaaaaagcattacggcatcttttgcattcctc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||| || |||| |||||||||||||||||||| |
|
|
| T |
14489327 |
cctctctagcaagagtatgagcgacctcattcgcttgtctccgactaaacttcaccttagagttttcgaaataaacattgcggcatcttttgcattcctc |
14489426 |
T |
|
| Q |
201 |
caaaattgaaccaaactcagacacatcattgctacctttg |
240 |
Q |
| |
|
||| |||| ||||| ||||| |||| ||||| |||||| |
|
|
| T |
14489427 |
caatattgctccaaattcagaaacattgttgctgcctttg |
14489466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 6291609 - 6291496
Alignment:
| Q |
11 |
ggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaaga-catggggaccagctgagtatatggcctctttag |
109 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| | |||||| | |||||||| ||||| | ||| || |
|
|
| T |
6291609 |
ggaaaatagcttatagtttttcattattaatcaaagtcaaaatacatagaggtacatcataaaaaatcatgggaatcagctgagaatatgacatctctaa |
6291510 |
T |
|
| Q |
110 |
caagagtatgagcg |
123 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
6291509 |
caaaagtatgagcg |
6291496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 240
Target Start/End: Original strand, 27039786 - 27039924
Alignment:
| Q |
100 |
gcctctttagcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttcgaaaaaagcattacggcatcttttgcattcct |
199 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||||||||| || |||| |||||||||||||| |||| |
|
|
| T |
27039786 |
gcctctctagcaagagtatgagcgacctcattcgctcgtctcct--taaactccaccttagagttttcgaaataaacattgcggcatcttttgcaatcct |
27039883 |
T |
|
| Q |
200 |
ccaaaattgaaccaaactcagacacatcattgctacctttg |
240 |
Q |
| |
|
|||| |||| ||||| ||||| |||| ||||| |||||| |
|
|
| T |
27039884 |
ccaatattgctccaaattcagaaacattgttgctgcctttg |
27039924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 28463303 - 28463241
Alignment:
| Q |
12 |
gaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaa |
74 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| ||| |||||| |||||| |
|
|
| T |
28463303 |
gaaaatagcttatagtttttcattattaatcaatgtcaaaatacaaagaagtacatcattaaa |
28463241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 27039679 - 27039711
Alignment:
| Q |
12 |
gaaaatagcttatagcttttcattattaatcaa |
44 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27039679 |
gaaaatagcttatagcttttcattattaatcaa |
27039711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22697541 - 22697587
Alignment:
| Q |
1 |
ttttttagagggaaaatagcttatagcttttcattattaatcaaagt |
47 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22697541 |
tttttttgacggaaacaagcttatagcttttcattattaatcaaagt |
22697587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 20864170 - 20864141
Alignment:
| Q |
18 |
agcttatagcttttcattattaatcaaagt |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
20864170 |
agcttatagcttttcattattaatcaaagt |
20864141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 202
Target Start/End: Complemental strand, 38356723 - 38356631
Alignment:
| Q |
110 |
caagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttcgaaaaaagcattacggcatcttttgcattcctcca |
202 |
Q |
| |
|
|||||||||||| ||| ||| || |||||||||| || || || ||||||| ||||||||| || |||||| |||||||| ||||| |||| |
|
|
| T |
38356723 |
caagagtatgagggacttcactcacttgtctccgactaaattccaccttagaattttcgaaataaacattacaacatcttttacattcgtcca |
38356631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 30273595 - 30273789
Alignment:
| Q |
14 |
aaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagcaag |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| | |||| || || ||| || ||||||||||||| | || || ||| ||| ||||||| |
|
|
| T |
30273595 |
aaatatcttatagcttttcattattaatcattgtcaaaatgtaaagagttatatcattgaaaacatggggaccagttaagagtaaggcttctctagcaag |
30273694 |
T |
|
| Q |
114 |
agtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttcgaaaaaagcattacggcatcttttgcattcctccaaaattg |
208 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || ||||| |||||| ||||| |||| || ||||||| |||||||| ||||| ||||| |||| |
|
|
| T |
30273695 |
agtatgagcgacttcattcgcttgtctccgactaaactccaccttagtgtttttgaaataaccattacgacatcttttacattcatccaatattg |
30273789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 25939193 - 25939035
Alignment:
| Q |
9 |
agggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctcttta |
108 |
Q |
| |
|
||||||||||| |||||| ||||||||| || |||||||| ||||||| |||||| || |||||||| ||||||| |||| || | |||||||| | |
|
|
| T |
25939193 |
agggaaaataggttatagtttttcattaatactcaaagtcgaaatacaaagaggtgcaacattaaagatatggggattagctaagaaagtggcctctcga |
25939094 |
T |
|
| Q |
109 |
gcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttc |
167 |
Q |
| |
|
|| | ||| |||||||||||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
25939093 |
gctaaagtgtgagcgacctcattcgcttgtctccgactaaactctaccttagagttttc |
25939035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 40796698 - 40796569
Alignment:
| Q |
14 |
aaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagcaag |
113 |
Q |
| |
|
||||||||||||||||||||||| |||||| || ||||||| |||||||||| || ||||| || ||||| |||| | | |||| ||| ||||||| |
|
|
| T |
40796698 |
aaatagcttatagcttttcattaaatatcaaaatcgaaatacaaagaggtacatcatcaaagagatagggactagctaataaagtggcatctctagcaag |
40796599 |
T |
|
| Q |
114 |
agtatgagcgacctcattcgcttgtctccg |
143 |
Q |
| |
|
|||||||| ||| |||| |||||| |||| |
|
|
| T |
40796598 |
tgtatgagcaaccacatttgcttgtttccg |
40796569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 167
Target Start/End: Complemental strand, 44587811 - 44587650
Alignment:
| Q |
7 |
agagggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaaga-catggggaccagctgagtatatggcctct |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||| ||||| | ||||| | || ||||| || ||| | ||||| ||| |||| | | |||| ||| |
|
|
| T |
44587811 |
agagtgaaaatagcttatagcttttcattaaaaatcgaagtcgagatacaaaaagatacatcataaaaaaacatggtgactagctagggaagtggcttct |
44587712 |
T |
|
| Q |
106 |
ttagcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttc |
167 |
Q |
| |
|
| |||||||| |||||| ||| |||||| ||||||||| || ||||| ||||||||||||| |
|
|
| T |
44587711 |
tgagcaagagcatgagcaaccacattcgattgtctccgactaaactccaccttagagttttc |
44587650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 7176269 - 7176102
Alignment:
| Q |
14 |
aaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagcaag |
113 |
Q |
| |
|
||||| ||||||||||||||||| |||||| | ||||||| ||||||| |||||| ||||||||| |||| || || | |||||| ||| | |
|
|
| T |
7176269 |
aaataacttatagcttttcattagatatcaaatgccaaatacaagaaggtacaccattaaaatcatggggactagctaagaatgtagcctctcgagctaa |
7176170 |
T |
|
| Q |
114 |
agtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttcgaaaaaagcattac |
181 |
Q |
| |
|
| |||||||||| |||||||||||||||| | |||||| ||||||| ||||| ||| ||| ||||| |
|
|
| T |
7176169 |
attatgagcgacttcattcgcttgtctcctacaaaactcaaccttagaattttcaaaataagaattac |
7176102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 17904647 - 17904685
Alignment:
| Q |
9 |
agggaaaatagcttatagcttttcattattaatcaaagt |
47 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17904647 |
agggaaagaagcttatagcttttcattattaatcaaagt |
17904685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 1538873 - 1539039
Alignment:
| Q |
1 |
ttttttagagggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatgg |
100 |
Q |
| |
|
||||||| || |||||||||||||| |||||||||| |||||||||| | ||||| |||||||||| || ||| ||||||| || || | | | |||| |
|
|
| T |
1538873 |
ttttttatagagaaaatagcttataacttttcattaaaaatcaaagtcgagatacaaagaggtacatcatcaaaaacatgggaactagttagggaaatgg |
1538972 |
T |
|
| Q |
101 |
cctctttagcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttc |
167 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
1538973 |
cctctggagcaagagtatgagcgaccatattcgcttgtctccgactaaactccaccttagagttttc |
1539039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 19792437 - 19792284
Alignment:
| Q |
14 |
aaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagcaag |
113 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||| |||||||||| || ||||| |||||||| |||| | | |||||||| ||||||| |
|
|
| T |
19792437 |
aaatagcttatagcttttcattagatatcaaagtcgaaatacaaagaggtacatcatcaaagagatggggactagctaataaagtggcctctctagcaag |
19792338 |
T |
|
| Q |
114 |
agtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttc |
167 |
Q |
| |
|
|||||||| ||| |||| ||||||||||| | ||||| ||||||||||||| |
|
|
| T |
19792337 |
tgtatgagcaaccacatttgcttgtctccgattaaactccaccttagagttttc |
19792284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 22522491 - 22522657
Alignment:
| Q |
12 |
gaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagct-gagtatatggcctctttagc |
110 |
Q |
| |
|
|||||||| ||||| ||||| |||| ||||||||||| | ||||| | ||||||||||| ||| ||| ||| || |||| ||| | |||| ||| ||| |
|
|
| T |
22522491 |
gaaaatagtttataactttt-attaataatcaaagtcgagatacaaaaaggtacattatcaaaaacacgggaactagctagagaag-tggcttctcgagc |
22522588 |
T |
|
| Q |
111 |
aagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttttcgaaaaaagcatt |
179 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| || ||||| ||||||||||||| |||||| |||| |
|
|
| T |
22522589 |
aagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagagttttcaaaaaaatcatt |
22522657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 54332434 - 54332582
Alignment:
| Q |
16 |
atagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagct-gagtatatggcctctttagcaaga |
114 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| | ||| | | |||||||| || ||| | |||||||| |||| ||| | |||||||| ||||||| |
|
|
| T |
54332434 |
atagcttatagcttttcattaataatcaaagtcgagataaaaa-aggtacatcatcaaaaa-atggggactagctagagaag-tggcctctcgagcaaga |
54332530 |
T |
|
| Q |
115 |
gtatgagcgacctcattcgcttgtctccggctgaactcatccttagagtttt |
166 |
Q |
| |
|
|||||||||||| |||||| ||||||||| || ||||| |||||||||||| |
|
|
| T |
54332531 |
gtatgagcgaccacattcgtttgtctccgactaaactccaccttagagtttt |
54332582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 6032803 - 6032874
Alignment:
| Q |
95 |
atatggcctctttagcaagagtatgagcgacctcattcgcttgtctccggctgaactcatccttagagtttt |
166 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||| || ||| | |||||||||||| |
|
|
| T |
6032803 |
atatggcctctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaacaccaccttagagtttt |
6032874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 27393125 - 27393190
Alignment:
| Q |
2 |
tttttagagggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacat |
67 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||| |||||||||| | ||||| |||||||||| |
|
|
| T |
27393125 |
tttttggagagaaaatagcttatagcttttcattaaaaatcaaagtcgagatacaaagaggtacat |
27393190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 6032759 - 6032796
Alignment:
| Q |
8 |
gagggaaaatagcttatagcttttcattattaatcaaa |
45 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
6032759 |
gagggaaaatagtttatagcttttcattaataatcaaa |
6032796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 16932876 - 16932905
Alignment:
| Q |
18 |
agcttatagcttttcattattaatcaaagt |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
16932876 |
agcttatagcttttcattattaatcaaagt |
16932905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 51899388 - 51899417
Alignment:
| Q |
18 |
agcttatagcttttcattattaatcaaagt |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
51899388 |
agcttatagcttttcattattaatcaaagt |
51899417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 48536835 - 48536863
Alignment:
| Q |
18 |
agcttatagcttttcattattaatcaaag |
46 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
48536835 |
agcttatagcttttcattattaatcaaag |
48536863 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 231
Target Start/End: Original strand, 34767601 - 34767794
Alignment:
| Q |
39 |
aatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagcaagagtatgagcgacctcattcgcttgt |
138 |
Q |
| |
|
||||||| |||||||| |||||||||||| |||||||||||| |||| || || ||||| | |||||||| |||||||||||| |||||||||| | |
|
|
| T |
34767601 |
aatcaaaatcaaaatatatagaggtacatcattaaagacatgataaccaactaagaatatgatatttttagcaaaagtatgagcgacttcattcgcttat |
34767700 |
T |
|
| Q |
139 |
ctccggctgaactcatccttagagttttcgaaaaaag-cattacggcatcttttgcattcctccaaaattgaaccaaactcagacacatcattg |
231 |
Q |
| |
|
|| || ||||||| ||||||| || |||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34767701 |
cttcgactgaacttcaccttagaattaaaaaaaaaaaacattgaaacatcttttgcattcccccaaaattgaaccaaactcagacacatcattg |
34767794 |
T |
|
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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 11116320 - 11116169
Alignment:
| Q |
14 |
aaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagcaag |
113 |
Q |
| |
|
||||||||||||||||||||||| |||||| | ||||||| | ||| |||| |||||| |||||||| |||| || | ||||||||| ||||| |
|
|
| T |
11116320 |
aaatagcttatagcttttcattaaatatcaaatttgaaatacaaaaaggcacatcattaaaattatggggactagctaaggacgtggcctcttgtgcaag |
11116221 |
T |
|
| Q |
114 |
agtatgagcgacctcattcgcttgtctccggctgaactcatccttagagttt |
165 |
Q |
| |
|
||| ||||||||||| |||||||||||||| || ||||| ||||||||||| |
|
|
| T |
11116220 |
agtgtgagcgacctcgttcgcttgtctccgactaaactctaccttagagttt |
11116169 |
T |
|
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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 50858606 - 50858465
Alignment:
| Q |
11 |
ggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagc |
110 |
Q |
| |
|
||||| |||||||||| ||||||||| || |||| | ||||||| | || ||||||| ||| |||||||||| |||| || | | ||||||| ||| |
|
|
| T |
50858606 |
ggaaagtagcttatagtttttcattacatattaaagaccaaatacaaggtggaacattatcaaacacatggggactagctaaggacaaggcctctcgagc |
50858507 |
T |
|
| Q |
111 |
aagagtatgagcgacctcattcgcttgtctccggctgaactc |
152 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
50858506 |
aagagtatgagcgacctcgttcgcttgtctccgactaaactc |
50858465 |
T |
|
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Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 50150798 - 50150678
Alignment:
| Q |
11 |
ggaaaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagc |
110 |
Q |
| |
|
|||||| | |||||||||||||| | ||||||| ||||||||||| |||| |||||||||| | ||| |||||||| || || || || ||| |||| |
|
|
| T |
50150798 |
ggaaaacaacttatagcttttcactgttaatcattgtcaaaatacaaagagatacattattacatacacggggaccaactaagaatgtgaattctctagc |
50150699 |
T |
|
| Q |
111 |
aagagtatgagcgacctcatt |
131 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
50150698 |
aagagtatgagcgacctcatt |
50150678 |
T |
|
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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 36220729 - 36220758
Alignment:
| Q |
18 |
agcttatagcttttcattattaatcaaagt |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
36220729 |
agcttatagcttttcattattaatcaaagt |
36220758 |
T |
|
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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 48255142 - 48255113
Alignment:
| Q |
18 |
agcttatagcttttcattattaatcaaagt |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
48255142 |
agcttatagcttttcattattaatcaaagt |
48255113 |
T |
|
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Target: scaffold0169 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 22666 - 22807
Alignment:
| Q |
22 |
tatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaagacatggggaccagctgagtatatggcctctttagcaagagtatgag |
121 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||| || ||| | |||||||| |||| | | |||| |||| |||||||||||||| |
|
|
| T |
22666 |
tatagcttttcattaaaaatcaaagtc----gacatagaggtacatcatcaaaaatatggggactagctagggaaatggtctctcgagcaagagtatgag |
22761 |
T |
|
| Q |
122 |
cgacctcattcgcttgtctccggctgaactcatccttagagttttc |
167 |
Q |
| |
|
||||| |||||||||||||||| || |||| ||||||||||||| |
|
|
| T |
22762 |
cgaccacattcgcttgtctccgactaaacttcaccttagagttttc |
22807 |
T |
|
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Target: scaffold0036 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 44431 - 44386
Alignment:
| Q |
21 |
ttatagcttttcattattaatcaaagtcaaaatacatagaggtaca |
66 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
44431 |
ttatagtttttcattaataatcaaagtcgaaatacaaagaggtaca |
44386 |
T |
|
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