View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20919_high_64 (Length: 249)
Name: NF20919_high_64
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_high_64 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 30267118 - 30267362
Alignment:
| Q |
7 |
aattattcttgaaaatacaagtacttgttgaattatgtgtttggtactgtaaattttgtctaagtctaatacaagagtgtatcaaattctaactaccgat |
106 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30267118 |
aattattcttgaaaatacaagtgcttgttgaattatgtgtttggtactgtaaattttgtctaagtctaatacaagagtgtatcagattctaactaccgat |
30267217 |
T |
|
| Q |
107 |
ctgttcttgggcttttacttcctatccaagattaaattgaattgagggcatatacggtcttaactcctg--aattagagggatcggaagttacaaaccga |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || |
|
|
| T |
30267218 |
ctgttcttgggcttttacttcctatccaagattaaattgaattgagggcatatacggtcttaactcctgataatcagagggatcggaagttacaaactga |
30267317 |
T |
|
| Q |
205 |
gaggggctcttttcgaaatttgagagatatgtgaacattttgagc |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30267318 |
gaggggctcttttcgaaatttgagagatatgtgaacattttgagc |
30267362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 30285070 - 30284826
Alignment:
| Q |
7 |
aattattcttgaaaatacaagtacttgttgaattatgtgtttggtactgtaaattttgtctaagtctaatacaagagtgtatcaaattctaactaccgat |
106 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30285070 |
aattattcttgaaaatacaagtgcttgttgaattatgtgtttggtactgtaaattttgtctaagtctaatacaagagtgtatcagattctaactaccgat |
30284971 |
T |
|
| Q |
107 |
ctgttcttgggcttttacttcctatccaagattaaattgaattgagggcatatacggtcttaactcctg--aattagagggatcggaagttacaaaccga |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || |
|
|
| T |
30284970 |
ctgttcttgggcttttacttcctatccaagattaaattgaattgagggcatatacggtcttaactcctgataatcagagggatcggaagttacaaactga |
30284871 |
T |
|
| Q |
205 |
gaggggctcttttcgaaatttgagagatatgtgaacattttgagc |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30284870 |
gaggggctcttttcgaaatttgagagatatgtgaacattttgagc |
30284826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 23189577 - 23189503
Alignment:
| Q |
35 |
tgaattatgtgtttggtactgtaaattttgtctaagtctaatacaagagtgtatcaaattctaactaccgatctg |
109 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||| || || || ||||||| |||||| |||||||| |
|
|
| T |
23189577 |
tgaattatgtgtttggtagtgtaaattatgtctaagtctaaagcatgaatggatcaaatcctaactcccgatctg |
23189503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 23175696 - 23175658
Alignment:
| Q |
35 |
tgaattatgtgtttggtactgtaaattttgtctaagtct |
73 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
23175696 |
tgaattacgtgtttggtactgtaaattatgtctaagtct |
23175658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University