View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_high_68 (Length: 239)
Name: NF20919_high_68
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_high_68 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 32524791 - 32524576
Alignment:
| Q |
21 |
agatagcttaggaattaaattgatggtttatcttttgatttagttagttgaaggccatgttgcgattgtgtttatccaacgatgaagtgttgtttaatta |
120 |
Q |
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| T |
32524791 |
agatagctcaggaattaaattgatggtttatcttttgatttagttagctgaagggcatcttacgattgtgtttatccaaagatgaagtgtcgtttaacta |
32524692 |
T |
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| Q |
121 |
atagtaggtcatagaaaaattttaaacctatgataatgtttcgttcgaaaaacctcacgatactatttttaatgatctttgataatgcctcaacattgat |
220 |
Q |
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|||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
32524691 |
atag---gtcatagagaaattttaaacctatgagaatgtttcgttcgaaaaacctcatgatactatttttaatgatctttgttaatgcctcgacattgat |
32524595 |
T |
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| Q |
221 |
tcattaggtgaaatagtcg |
239 |
Q |
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||||||||||||||||||| |
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| T |
32524594 |
tcattaggtgaaatagtcg |
32524576 |
T |
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