View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_high_69 (Length: 238)
Name: NF20919_high_69
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_high_69 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 42929301 - 42929095
Alignment:
| Q |
18 |
tcttgatcattagaagcttttgaaaagctagaatcacagtttggagaaacagtggagaaggattcagaagcgtccaagtaaactgagttaatggttttga |
117 |
Q |
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| T |
42929301 |
tcttgatcattagaagcttttgaaaagctagaatcacagtttggagaaacagtggagaaggattcagaagcatccaagtaaactgagttaatggttttga |
42929202 |
T |
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| Q |
118 |
aagtgtcatctttgttgatgttatcagctctaaaagagagtgtttttggttggtgacaatatggccatggccatgatgaagaagaagatgaatatttgag |
217 |
Q |
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| T |
42929201 |
aagtgtcatctttgttgatgttatcagctctaaaagagagtgtttttggttggtgacaatatggccatggccatgatgaagaagaagatgaatatttgag |
42929102 |
T |
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| Q |
218 |
ttctgtg |
224 |
Q |
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||||||| |
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| T |
42929101 |
ttctgtg |
42929095 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 25531495 - 25531550
Alignment:
| Q |
144 |
gctctaaaagagagtgtttttggttggtgacaatatggccatggccatgatgaaga |
199 |
Q |
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||||||||||| |||||||||||||||| |||| ||||||| | |||||| ||||| |
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| T |
25531495 |
gctctaaaagaaagtgtttttggttggttacaagatggccaagaccatgaagaaga |
25531550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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