View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_high_70 (Length: 237)
Name: NF20919_high_70
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_high_70 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 30267474 - 30267695
Alignment:
| Q |
1 |
tgtcttttgaatgacatgacacctaaccttattgcaagaaatacactagatttattgtatgaataacaattagtttgatgcatgtaactctttgagagtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30267474 |
tgtcttttgaatgacatgacacctaaccttattgcaagaaatacactagatttattgtacgaataacaattagtttgatgcatgtaactctttgagagtt |
30267573 |
T |
|
| Q |
101 |
agcttgttgcatgtaattccattagttttccttctcctgtagataagagttcataatgtactttcatcatcaatcatgtaataaaatcaagtgagtgttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30267574 |
agcttgttgcatgtaattccattagttttccttctcctgtagataagagttcataatgtactttcatcatcaatcatgtaataaaatcaagtgagtgttc |
30267673 |
T |
|
| Q |
201 |
ttttaaaacaaatgatctcatt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
30267674 |
ttttaaaacaaatgatctcatt |
30267695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30284714 - 30284493
Alignment:
| Q |
1 |
tgtcttttgaatgacatgacacctaaccttattgcaagaaatacactagatttattgtatgaataacaattagtttgatgcatgtaactctttgagagtt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30284714 |
tgtcttttgaatgacatgacacctaaccttattgcaagaaatacactagatttattgtacgaataacaattagtttgatgcatgtaactctttgagagtt |
30284615 |
T |
|
| Q |
101 |
agcttgttgcatgtaattccattagttttccttctcctgtagataagagttcataatgtactttcatcatcaatcatgtaataaaatcaagtgagtgttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30284614 |
agcttgttgcatgtaattccattagttttccttctcctgtagataagagttcataatgtactttcatcatcaatcatgtaataaaatcaagtgagtgttc |
30284515 |
T |
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| Q |
201 |
ttttaaaacaaatgatctcatt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
30284514 |
ttttaaaacaaatgatctcatt |
30284493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 4389867 - 4389799
Alignment:
| Q |
102 |
gcttgttgcatgtaattccattagttttccttctcctgtagataagagttcataatgtactttcatcat |
170 |
Q |
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||||||||||||||||| |||| ||||||||||||| ||||||||||| | ||||||||||| ||||| |
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| T |
4389867 |
gcttgttgcatgtaattttattatttttccttctcctatagataagagtccgtaatgtactttgatcat |
4389799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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