View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_high_77 (Length: 227)
Name: NF20919_high_77
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_high_77 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44898182 - 44898401
Alignment:
| Q |
1 |
ccggggaatacgctactttgatcatggaagaactgggcagtaatggcgaaaaaactatcagggtaattattacatataagattagggcagttgtgtttca |
100 |
Q |
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| T |
44898182 |
ccggggaatacgctgctttgatcatggaagaactgggccgtaatggcgaagaatctatcagggtaattattacatataagattagggcagttgtgtttca |
44898281 |
T |
|
| Q |
101 |
ttaggtgatctatttactaatatagtttctcagtttagccacaattctannnnnnnnccatttgttgattattgtttggaagacaggtaaacgaccttga |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44898282 |
ttaggtgatctatttactaatatagtttctcattttagccacaattcta-tttttttccatttgttgattattgtttggaagacaggtaaacgaccttga |
44898380 |
T |
|
| Q |
201 |
ggaactattgttgcatgtacc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
44898381 |
ggaactattgttgcatgtacc |
44898401 |
T |
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