View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20919_high_8 (Length: 554)
Name: NF20919_high_8
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 297 - 542
Target Start/End: Complemental strand, 38005056 - 38004811
Alignment:
| Q |
297 |
gaggcatgatggattgagtatttgtggggatcgatgattctaattcaagttaattgacaattgaattttattttagtgggagtcaatataattggttttc |
396 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38005056 |
gaggcatgatggattgagtatttttggggatcgatgattctaattcaagttaattgacaattgaattttattttagtgggagtcaatataattggttttc |
38004957 |
T |
|
| Q |
397 |
aaagtttcattgtggtgaaatttcacttttggttccaacnnnnnnnttcagcagatattgtaattgagaataattatggatgttaaatttacttttgttc |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38004956 |
aaagtttcattgtggtgaaatttcacttttggttccaacaaaaaaattcagcagatattgtaattgagaatagttatggatgttaaatttacttttgttc |
38004857 |
T |
|
| Q |
497 |
ttatcagacgttatcatcattccgtaagatttcatgtgttcctctc |
542 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38004856 |
ttatcagacgttatcatcattccgtaagatttcttgtgttcctctc |
38004811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 38005330 - 38005128
Alignment:
| Q |
19 |
caaataacagggatacaatgttgtttgagaatgcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38005330 |
caaataacagggatacaatgttgtttgagaatgcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacc |
38005231 |
T |
|
| Q |
119 |
tatgaggagcttgttgaggctttctaaaaatgttaatgttgatgattttgatccaactgaaccacctaagactgatgttatcactctttagtactttatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38005230 |
tatgaggagcttgttgaggctttctaaaaatgttgatgttgatgattttgatccaactgaaccacctaagactgatgttatcactctttagtactttatg |
38005131 |
T |
|
| Q |
219 |
gtg |
221 |
Q |
| |
|
||| |
|
|
| T |
38005130 |
gtg |
38005128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 26462477 - 26462679
Alignment:
| Q |
19 |
caaataacagggatacaatgttgtttgagaatgcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacc |
118 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26462477 |
caaataacaaggatacaatgttgtttgagaaagcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacc |
26462576 |
T |
|
| Q |
119 |
tatgaggagcttgttgaggctttctaaaaatgttaatgttgatgattttgatccaactgaaccacctaagactgatgttatcactctttagtactttatg |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26462577 |
tatgaggagcttgttgagactttctaaaaatgttgttgttgatgattttgatccaactgaaccacccaagactgatgttatcactctttagtactttatg |
26462676 |
T |
|
| Q |
219 |
gtg |
221 |
Q |
| |
|
||| |
|
|
| T |
26462677 |
gtg |
26462679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University