View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_high_9 (Length: 523)
Name: NF20919_high_9
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 44874968 - 44875476
Alignment:
| Q |
1 |
attatccaatctacacgctccaactccacaatttcatctctgcttctctccacactctccaatgaaacaacatcacaacaacccatcaacaaaaagatca |
100 |
Q |
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| T |
44874968 |
attatccaatctacacgctccaagtccacaatttcatctctgcttctct---------ccaatgaaacaacatcacaacaacccatcaacaaaaagatca |
44875058 |
T |
|
| Q |
101 |
acttttcatctgcagcagctaccttcagaggtttaggatgcactgccggtgcttctcagcaagtgtcggtgccggcagtgattcgcgcttcagcagattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44875059 |
acttttcatctgcagcagctaccttcagaggtttaggatgcactgccggtgcttctcagcaagtgtcggtgccggcagtgattcgtgcttcagcagattg |
44875158 |
T |
|
| Q |
201 |
gcctcatcaagggaagaaaaccagaaaaaagaagcacaagaataataatgatggttcttcatcttcttcttgtgttgattttcaagatgtttggtgtggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44875159 |
gcctcatcaagggaagaaaaccagaaaaaagaagcacaagaatagtaatgatggttcttcatcttcttcttgtgttgattttcaagatgtttggtgtggt |
44875258 |
T |
|
| Q |
301 |
cctggaattggattttcagcagatgctgctgcatctgttgattgtgttgtgtctaagaagaatgtgtcttcaagagctaaaattgatgtagacaagataa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44875259 |
cctggaattggattttcagcagatgctgctgcatctgttgattgtgttgtgtctaagaagaatgtgtcttcaagagctaaaattgatgtagacaagataa |
44875358 |
T |
|
| Q |
401 |
ctcacagagaggtagtattacta-tttttca--nnnnnnnnnnaccattttgaaaattgtgttgttcttcttctatggacattttggttagattgcatta |
497 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44875359 |
ctcacagagaggtagtattactattttttcattttttttttttaccattttgaaaattgtgttgttcttcttctatggacattttggttagattgcatta |
44875458 |
T |
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| Q |
498 |
atgatgtttccctttgct |
515 |
Q |
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| T |
44875459 |
atgatgtttccctttgct |
44875476 |
T |
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