View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20919_low_11 (Length: 489)

Name: NF20919_low_11
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20919_low_11
NF20919_low_11
[»] chr4 (11 HSPs)
chr4 (4-152)||(46514208-46514356)
chr4 (44-152)||(46514885-46514993)
chr4 (46-153)||(33352899-33353006)
chr4 (46-109)||(53523703-53523766)
chr4 (200-245)||(38690667-38690712)
chr4 (92-153)||(44817740-44817801)
chr4 (418-449)||(37870341-37870372)
chr4 (200-238)||(49811463-49811501)
chr4 (76-153)||(16897609-16897686)
chr4 (190-234)||(13539898-13539942)
chr4 (200-248)||(29889824-29889872)
[»] chr1 (13 HSPs)
chr1 (12-153)||(13259612-13259753)
chr1 (1-153)||(29117346-29117496)
chr1 (22-153)||(29116709-29116838)
chr1 (46-152)||(13258964-13259071)
chr1 (46-153)||(26778866-26778973)
chr1 (46-152)||(27773239-27773345)
chr1 (200-238)||(1862895-1862933)
chr1 (200-244)||(35195661-35195705)
chr1 (198-245)||(19424045-19424092)
chr1 (200-243)||(22779224-22779267)
chr1 (200-245)||(24253692-24253737)
chr1 (208-245)||(34940465-34940502)
chr1 (200-248)||(12662692-12662740)
[»] chr8 (5 HSPs)
chr8 (355-472)||(18081114-18081231)
chr8 (181-314)||(18080921-18081054)
chr8 (57-153)||(526795-526891)
chr8 (34-153)||(33181050-33181170)
chr8 (203-245)||(19957370-19957412)
[»] chr2 (4 HSPs)
chr2 (3-153)||(28020104-28020255)
chr2 (22-153)||(28020755-28020884)
chr2 (68-125)||(33045122-33045179)
chr2 (200-248)||(29090417-29090464)
[»] chr7 (12 HSPs)
chr7 (43-152)||(43444456-43444565)
chr7 (46-137)||(17889514-17889605)
chr7 (57-153)||(17888543-17888639)
chr7 (200-248)||(15025157-15025205)
chr7 (57-125)||(17890404-17890472)
chr7 (200-248)||(46570017-46570065)
chr7 (93-153)||(48626817-48626876)
chr7 (200-249)||(8133840-8133889)
chr7 (270-311)||(12166154-12166195)
chr7 (190-234)||(9668874-9668918)
chr7 (200-244)||(29357802-29357846)
chr7 (200-244)||(46243292-46243336)
[»] chr3 (4 HSPs)
chr3 (76-153)||(42933487-42933564)
chr3 (203-246)||(30693232-30693275)
chr3 (191-248)||(166780-166837)
chr3 (208-245)||(30745218-30745255)
[»] scaffold0091 (1 HSPs)
scaffold0091 (46-123)||(3581-3658)
[»] chr5 (2 HSPs)
chr5 (209-246)||(16174879-16174916)
chr5 (207-245)||(34729480-34729518)
[»] chr6 (1 HSPs)
chr6 (191-302)||(1194695-1194805)


Alignment Details
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 46514356 - 46514208
Alignment:
Q  4 tagaggtagttgtgttggaacgcggaggaaaaaagaagaagcgatggtccacctgatgtttattttggaactttaaatttaagcctttcattttaatcta 103  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  46514356 tagaggcagttgtgttggaacgtggaggaaaaaagaagaagcgatggtccacctgatgtttattttggaactttaaatctaagtctttcattttaatcta 46514257  T
Q  104 aagggttgatattgtattctcacattcttatataaagaagtcattctca 152  Q
    ||||| |||||||||||||||||||||| ||||||  ||||||||||||    
T  46514256 aagggctgatattgtattctcacattctcatataacaaagtcattctca 46514208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 44 - 152
Target Start/End: Original strand, 46514885 - 46514993
Alignment:
Q  44 gcgatggtccacctgatgtttattttggaactttaaatttaagcctttcattttaatctaaagggttgatattgtattctcacattcttatataaagaag 143  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||  |||    
T  46514885 gcgatggtccacctgatgtttattttggaactttaaatctaagcctttcattttaatctaaagggctgatattgtattctcacattctcatataacaaag 46514984  T
Q  144 tcattctca 152  Q
    |||||||||    
T  46514985 tcattctca 46514993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 46 - 153
Target Start/End: Original strand, 33352899 - 33353006
Alignment:
Q  46 gatggtccacctgatgtttattttggaactttaaatttaagcctttcattttaatctaaagggttgatattgtattctcacattcttatataaagaagtc 145  Q
    |||||||||| ||||| || | ||||||| |||||| ||| ||||||||||||||||||| |  || || | |||||||||||||| ||||||  |||||    
T  33352899 gatggtccacgtgatgcttttattggaacattaaatctaaacctttcattttaatctaaatgactgttaatatattctcacattctcatataagaaagtc 33352998  T
Q  146 attctcac 153  Q
    ||||||||    
T  33352999 attctcac 33353006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 53523703 - 53523766
Alignment:
Q  46 gatggtccacctgatgtttattttggaactttaaatttaagcctttcattttaatctaaagggt 109  Q
    |||||||||| | ||||||||||||| ||||||||| |||| ||||||||| ||||||||||||    
T  53523703 gatggtccacgtaatgtttattttggtactttaaatctaagtctttcatttaaatctaaagggt 53523766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 38690667 - 38690712
Alignment:
Q  200 gagcttatctcacttgataagggataatgcatattatatacagggg 245  Q
    ||||||| |||||||| |||||||||||||||||||||| ||||||    
T  38690667 gagcttagctcacttggtaagggataatgcatattatatgcagggg 38690712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 44817801 - 44817740
Alignment:
Q  92 cattttaatctaaagggttgatattgtattctcacattcttatataaagaagtcattctcac 153  Q
    ||||||||||| || || | ||| |||||||||||||||| |||||| ||||||||||||||    
T  44817801 cattttaatctgaatggctaataatgtattctcacattctcatataaggaagtcattctcac 44817740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 449
Target Start/End: Original strand, 37870341 - 37870372
Alignment:
Q  418 atatctcccactcactttgctttgcactgaca 449  Q
    ||||||||||||||||||||||||||||||||    
T  37870341 atatctcccactcactttgctttgcactgaca 37870372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 49811501 - 49811463
Alignment:
Q  200 gagcttatctcacttgataagggataatgcatattatat 238  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  49811501 gagcttatctcacttggtaaggaataatgcatattatat 49811463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 16897686 - 16897609
Alignment:
Q  76 ttaaatttaagcctttcattttaatctaaagggttgatattgtattctcacattcttatataaagaagtcattctcac 153  Q
    |||||| |||||| | ||||||||||| |||||   ||| |||||||||||||||| | |||  ||||||||||||||    
T  16897686 ttaaatctaagccctccattttaatctgaagggcaaataatgtattctcacattctcacatacggaagtcattctcac 16897609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 13539942 - 13539898
Alignment:
Q  190 atgtcgccgcgagcttatctcacttgataagggataatgcatatt 234  Q
    ||||| ||| ||||||| |||||||| ||||||||||||||||||    
T  13539942 atgtctccgtgagcttagctcacttggtaagggataatgcatatt 13539898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 29889872 - 29889824
Alignment:
Q  200 gagcttatctcacttgataagggataatgcatattatatacaggggccg 248  Q
    ||||||| ||||||   |||||||||||||||||||||| |||||||||    
T  29889872 gagcttagctcactatgtaagggataatgcatattatatgcaggggccg 29889824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 8e-53; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 13259612 - 13259753
Alignment:
Q  12 gttgtgttggaacgcggaggaaaaaagaagaagcgatggtccacctgatgtttattttggaactttaaatttaagcctttcattttaatctaaagggttg 111  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||    
T  13259612 gttgtgttggaacccggagaaaaaaagaagaagcgatggtccacctgatgtttattttggaactttaaatctaagcctttcattttaatctaaaaggctg 13259711  T
Q  112 atattgtattctcacattcttatataaagaagtcattctcac 153  Q
    |||||||||||| ||||||| | ||||| |||||||||||||    
T  13259712 atattgtattcttacattctcacataaaaaagtcattctcac 13259753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 29117346 - 29117496
Alignment:
Q  1 acgtagaggtagttgtgttggaacgcggaggaaaaaagaagaagcgatggtccacctgatgtttattttggaactttaaatttaagcctttcattttaat 100  Q
    |||||||||  ||||||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||    
T  29117346 acgtagaggccgttgtgttggaacgcggag-aaaaaaga-gaagcgatggtccaccttatatttattttggaactttaaatctaagcctttcattttaat 29117443  T
Q  101 ctaaagggttgatattgtattctcacattcttatataaagaagtcattctcac 153  Q
    |||||||| |||||||||||||| ||||||| | |||||||| ||||||||||    
T  29117444 ctaaagggctgatattgtattcttacattctcacataaagaaatcattctcac 29117496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 29116838 - 29116709
Alignment:
Q  22 aacgcggaggaaaaaagaagaagcgatggtccacctgatgtttattttggaactttaaatttaagcctttcattttaatctaaagggttgatattgtatt 121  Q
    ||||||||| | ||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  29116838 aacgcggagaagaaaagaag--gcgatggtccacctgatgtttattttggaactttaaatctaagccttttattttaatctaaagggctgatattgtatt 29116741  T
Q  122 ctcacattcttatataaagaagtcattctcac 153  Q
    || ||||||| | |||||||| ||||||||||    
T  29116740 cttacattctcacataaagaaatcattctcac 29116709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 13259071 - 13258964
Alignment:
Q  46 gatggtccacctgatgtttattttggaactttaaatttaagcc-tttcattttaatctaaagggttgatattgtattctcacattcttatataaagaagt 144  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||  |||||||||||||||||||||| ||||||||||||    
T  13259071 gatggtccacctgatgtttattttggaactttaaatctaagccatttcattttaatctaaaggactgatattgtattctcacattctcatataaagaagt 13258972  T
Q  145 cattctca 152  Q
    ||||||||    
T  13258971 cattctca 13258964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 26778973 - 26778866
Alignment:
Q  46 gatggtccacctgatgtttattttggaactttaaatttaagcctttcattttaatctaaagggttgatattgtattctcacattcttatataaagaagtc 145  Q
    |||||||||| | ||||||||||||| || |||||| |||||||||||||| ||||||||||||||||| || ||||||||||||| ||  ||| |||||    
T  26778973 gatggtccacataatgtttattttggtacattaaatctaagcctttcatttaaatctaaagggttgataatgcattctcacattctcatgcaaataagtc 26778874  T
Q  146 attctcac 153  Q
    ||||||||    
T  26778873 attctcac 26778866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 27773345 - 27773239
Alignment:
Q  46 gatggtccacctgatgtttattttggaactttaaatttaagcctttcattttaatctaaagggttgatattgtattctcacattcttatataaagaagtc 145  Q
    |||||||||  |||||||| | |||| || ||||||||||||| ||||||||||||| ||||| ||||| | |||||||||| ||| | ||||  |||||    
T  27773345 gatggtccatgtgatgtttttattggtacattaaatttaagcccttcattttaatctgaagggctgataatatattctcacactctcacataagaaagtc 27773246  T
Q  146 attctca 152  Q
    |||||||    
T  27773245 attctca 27773239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 1862933 - 1862895
Alignment:
Q  200 gagcttatctcacttgataagggataatgcatattatat 238  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  1862933 gagcttagctcacttgataagggataatgcatattatat 1862895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 35195705 - 35195661
Alignment:
Q  200 gagcttatctcacttgataagggataatgcatattatatacaggg 244  Q
    ||||||| ||||||| ||||||||||||||||||||||| |||||    
T  35195705 gagcttagctcacttaataagggataatgcatattatatgcaggg 35195661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 19424045 - 19424092
Alignment:
Q  198 gcgagcttatctcacttgataagggataatgcatattatatacagggg 245  Q
    |||| |||| |||| |||||||||||||||||||||||||| ||||||    
T  19424045 gcgaacttagctcatttgataagggataatgcatattatatgcagggg 19424092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 22779224 - 22779267
Alignment:
Q  200 gagcttatctcacttgataagggataatgcatattatatacagg 243  Q
    ||||||| |||||||| |||||||||||||||||| ||||||||    
T  22779224 gagcttagctcacttggtaagggataatgcatattttatacagg 22779267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 24253737 - 24253692
Alignment:
Q  200 gagcttatctcacttgataagggataatgcatattatatacagggg 245  Q
    ||||||| ||||||||||||||||||||||||| | ||| ||||||    
T  24253737 gagcttagctcacttgataagggataatgcataatttatgcagggg 24253692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 34940502 - 34940465
Alignment:
Q  208 ctcacttgataagggataatgcatattatatacagggg 245  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  34940502 ctcacttggtaagggataatgcatattatatgcagggg 34940465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 12662692 - 12662740
Alignment:
Q  200 gagcttatctcacttgataagggataatgcatattatatacaggggccg 248  Q
    ||||||| |||| || |||||||||| |||||||||||| |||||||||    
T  12662692 gagcttagctcagttaataagggatattgcatattatatgcaggggccg 12662740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 355 - 472
Target Start/End: Original strand, 18081114 - 18081231
Alignment:
Q  355 aacaaactcatcgattcatgtaagaaaatgtgtcgaagtgtgattgaacgcgccaacaaggagatatctcccactcactttgctttgcactgacagtgta 454  Q
    ||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18081114 aacaaactcatcgtttcttgtaagaaaatgtgtcaaagtgtgattgaacgcgccaacaaggagatatctcccactcactttgctttgcactgacagtgta 18081213  T
Q  455 tttatttactcagcgatt 472  Q
    | ||||||||||||||||    
T  18081214 tctatttactcagcgatt 18081231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 181 - 314
Target Start/End: Original strand, 18080921 - 18081054
Alignment:
Q  181 aaggcaaaaatgtcgccgcgagcttatctcacttgataagggataatgcatattatatacaggggccgatacttaaaccaaaacaccatacttattcacg 280  Q
    |||| ||||||||| ||| || |||| |||||||| |||||||||||||||||||||| |||||| ||| | ||||| | ||| ||| |||||||||||     
T  18080921 aaggtaaaaatgtcaccgtgatcttaactcacttggtaagggataatgcatattatatgcaggggtcgaaatttaaatccaaaaaccctacttattcaca 18081020  T
Q  281 tttaaggtgaaattctctagctactaaactagtt 314  Q
    |||||||| ||||||||||||  |||| ||||||    
T  18081021 tttaaggtaaaattctctagccgctaagctagtt 18081054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 526891 - 526795
Alignment:
Q  57 tgatgtttattttggaactttaaatttaagcctttcattttaatctaaagggttgatattgtattctcacattcttatataaagaagtcattctcac 153  Q
    |||||||| | |||| || |||||| |||| | | ||||||||||| || || | ||| |||||||||||||||| |||||| ||||||||||||||    
T  526891 tgatgtttttattggtacattaaatctaagtcctccattttaatctgaatggctaataatgtattctcacattctcatataaggaagtcattctcac 526795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 33181050 - 33181170
Alignment:
Q  34 aaaagaagaagc-gatggtccacctgatgtttattttggaactttaaatttaagcctttcattttaatctaaagggttgatattgtattctcacattctt 132  Q
    |||||||||||  |||||| ||| |||||||| | |||| ||  ||||| |||||| ||||||||||| |||| || ||||| | ||||||||||||||     
T  33181050 aaaagaagaaggtgatggtgcacgtgatgtttttattggtacagtaaatctaagcccttcattttaatttaaaaggctgataatatattctcacattctc 33181149  T
Q  133 atataaagaagtcattctcac 153  Q
    | ||||  |||||||||||||    
T  33181150 aaataagaaagtcattctcac 33181170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 19957412 - 19957370
Alignment:
Q  203 cttatctcacttgataagggataatgcatattatatacagggg 245  Q
    |||| |||||||| |||||||||||||||||||||| ||||||    
T  19957412 cttagctcacttggtaagggataatgcatattatatgcagggg 19957370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 7e-47; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 28020255 - 28020104
Alignment:
Q  3 gtagaggtagttgtgttggaacgcggaggaaaaaa-gaagaagcgatggtccacctgatgtttattttggaactttaaatttaagcctttcattttaatc 101  Q
    |||||||  |||||||||||| |||||| |||||| ||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||    
T  28020255 gtagaggccgttgtgttggaatgcggagaaaaaaaagaagaagcgatggtccaccagatgtttattttggaattttaaatctaagcctttcattttaatc 28020156  T
Q  102 taaagggttgatattgtattctcacattcttatataaagaagtcattctcac 153  Q
    ||||||| |||||||||||||| ||||||| | ||||||| |||||||||||    
T  28020155 taaagggctgatattgtattcttacattctcacataaagatgtcattctcac 28020104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 28020755 - 28020884
Alignment:
Q  22 aacgcggaggaaaaaagaagaagcgatggtccacctgatgtttattttggaactttaaatttaagcctttcattttaatctaaagggttgatattgtatt 121  Q
    ||||||||| | ||||||||  | |||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||    
T  28020755 aacgcggagaagaaaagaag--gtgatggtccacctgatgtttattttggaactttaaatctgagcttttcattttaatctaaagggctgatattgtatt 28020852  T
Q  122 ctcacattcttatataaagaagtcattctcac 153  Q
    |||||||||| | |||||||||||||||||||    
T  28020853 ctcacattctcagataaagaagtcattctcac 28020884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 33045179 - 33045122
Alignment:
Q  68 ttggaactttaaatttaagcctttcattttaatctaaagggttgatattgtattctca 125  Q
    |||||| ||||||| |||||| ||||||||||||||||||||||||| || |||||||    
T  33045179 ttggaagtttaaatctaagccattcattttaatctaaagggttgataatggattctca 33045122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 29090417 - 29090464
Alignment:
Q  200 gagcttatctcacttgataagggataatgcatattatatacaggggccg 248  Q
    ||||||| ||||  |||||||||||||||||| ||||||||||||||||    
T  29090417 gagcttagctcatatgataagggataatgcat-ttatatacaggggccg 29090464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 43444456 - 43444565
Alignment:
Q  43 agcgatggtccacctgatgtttattttggaactttaaatttaagcctttcattttaatctaaagggttgatattgtattctcacattcttatataaagaa 142  Q
    ||||||||||||  | ||||||||||||| || |||||| |||||||||||||||||||||||||||||| | |||||||||||||||| | ||||||||    
T  43444456 agcgatggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcacattctcaaataaagaa 43444555  T
Q  143 gtcattctca 152  Q
    ||||||||||    
T  43444556 gtcattctca 43444565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 17889605 - 17889514
Alignment:
Q  46 gatggtccacctgatgtttattttggaactttaaatttaagcctttcattttaatctaaagggttgatattgtattctcacattcttatata 137  Q
    |||||||||| |||||||| | |||| || |||||| |||||| | ||||||||||| ||||| ||||| |||||||||| ||||| |||||    
T  17889605 gatggtccacatgatgtttttattggtacattaaatctaagccctccattttaatctgaagggctgataatgtattctcatattctcatata 17889514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 17888639 - 17888543
Alignment:
Q  57 tgatgtttattttggaactttaaatttaagcctttcattttaatctaaagggttgatattgtattctcacattcttatataaagaagtcattctcac 153  Q
    |||||||| | |||| || |||||| |||| | | ||||||||||| || || | ||| |||||||||||||||| |||||| ||||||||||||||    
T  17888639 tgatgtttttattggtacattaaatctaagtcctccattttaatctgaatggctaataatgtattctcacattctcatataaggaagtcattctcac 17888543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 15025157 - 15025205
Alignment:
Q  200 gagcttatctcacttgataagggataatgcatattatatacaggggccg 248  Q
    ||||||| |||| ||| |||||||||||||||||| |||||||||||||    
T  15025157 gagcttaactcatttggtaagggataatgcatattttatacaggggccg 15025205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 17890404 - 17890472
Alignment:
Q  57 tgatgtttattttggaactttaaatttaagcctttcattttaatctaaagggttgatattgtattctca 125  Q
    |||||||| | |||| || |||||| |||||| | ||||||||||| ||||||||||| ||||||||||    
T  17890404 tgatgtttttattggtacattaaatctaagccctccattttaatctgaagggttgataatgtattctca 17890472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 46570065 - 46570017
Alignment:
Q  200 gagcttatctcacttgataagggataatgcatattatatacaggggccg 248  Q
    ||||||| ||||||||||||||||||||||||| | ||| |||||||||    
T  46570065 gagcttagctcacttgataagggataatgcatagtttatgcaggggccg 46570017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 48626817 - 48626876
Alignment:
Q  93 attttaatctaaagggttgatattgtattctcacattcttatataaagaagtcattctcac 153  Q
    |||||||| |||||| || ||| |||||||||||||||| | |||||||||||||||||||    
T  48626817 attttaatataaaggctt-ataatgtattctcacattctcacataaagaagtcattctcac 48626876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 8133889 - 8133840
Alignment:
Q  200 gagcttatctcacttgataagggataatgcatattatatacaggggccga 249  Q
    ||||||| |||||||||||| |||||||||||| | ||| ||||||||||    
T  8133889 gagcttagctcacttgataatggataatgcataatttatgcaggggccga 8133840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 12166154 - 12166195
Alignment:
Q  270 acttattcacgtttaaggtgaaattctctagctactaaacta 311  Q
    |||||||||  ||||||||||| |||||||||||||||||||    
T  12166154 acttattcatctttaaggtgaatttctctagctactaaacta 12166195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 9668918 - 9668874
Alignment:
Q  190 atgtcgccgcgagcttatctcacttgataagggataatgcatatt 234  Q
    ||||| ||| ||||||| |||||||| ||||||||||||||||||    
T  9668918 atgtctccgtgagcttagctcacttggtaagggataatgcatatt 9668874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 29357802 - 29357846
Alignment:
Q  200 gagcttatctcacttgataagggataatgcatattatatacaggg 244  Q
    ||||||| ||||||||||||||||||||||||  ||||| |||||    
T  29357802 gagcttagctcacttgataagggataatgcattatatatgcaggg 29357846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 46243292 - 46243336
Alignment:
Q  200 gagcttatctcacttgataagggataatgcatattatatacaggg 244  Q
    ||||||| |||| ||| ||||||||||||||||||||||| ||||    
T  46243292 gagcttagctcatttggtaagggataatgcatattatatataggg 46243336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 42933487 - 42933564
Alignment:
Q  76 ttaaatttaagcctttcattttaatctaaagggttgatattgtattctcacattcttatataaagaagtcattctcac 153  Q
    ||||||||||||| ||||||||||||||||| | ||||| | |||||||||||||||||||||  |||||||||||||    
T  42933487 ttaaatttaagcccttcattttaatctaaagagctgataatatattctcacattcttatataataaagtcattctcac 42933564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 30693232 - 30693275
Alignment:
Q  203 cttatctcacttgataagggataatgcatattatatacaggggc 246  Q
    |||| ||||||| |||||| ||||||||||||||||||||||||    
T  30693232 cttaactcacttaataaggaataatgcatattatatacaggggc 30693275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 166780 - 166837
Alignment:
Q  191 tgtcgccgcgagcttatctcacttgataagggataatgcatattatatacaggggccg 248  Q
    |||| ||| ||||||| |||||||| |||||||||||||||| | ||| |||||||||    
T  166780 tgtccccgtgagcttagctcacttggtaagggataatgcataatttatgcaggggccg 166837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 30745255 - 30745218
Alignment:
Q  208 ctcacttgataagggataatgcatattatatacagggg 245  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  30745255 ctcatttgataagggataatgcataatatatacagggg 30745218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 3581 - 3658
Alignment:
Q  46 gatggtccacctgatgtttattttggaactttaaatttaagcctttcattttaatctaaagggttgatattgtattct 123  Q
    |||||||||| | ||||||||||||| || |||||| |||||||||||||| ||||||||||||||||| || |||||    
T  3581 gatggtccacataatgtttattttggtacattaaatctaagcctttcatttaaatctaaagggttgataatgcattct 3658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 16174879 - 16174916
Alignment:
Q  209 tcacttgataagggataatgcatattatatacaggggc 246  Q
    |||||||||||||||||||| |||||||||||||||||    
T  16174879 tcacttgataagggataatgtatattatatacaggggc 16174916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 245
Target Start/End: Original strand, 34729480 - 34729518
Alignment:
Q  207 tctcacttgataagggataatgcatattatatacagggg 245  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  34729480 tctcacttggtaagggataatgcatattatatgcagggg 34729518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 302
Target Start/End: Complemental strand, 1194805 - 1194695
Alignment:
Q  191 tgtcgccgcgagcttatctcacttgataagggataatgcatattatatacaggggccgatacttaaaccaaaacaccatacttattcacgtttaaggtga 290  Q
    |||| ||| ||||||| || |||||||||||||||||| ||| ||||| ||| |||| | | | |||||   |||||  |||||||||| ||||||||||    
T  1194805 tgtcaccgtgagcttagcttacttgataagggataatgtataatatatgcagcggccaaaattcaaaccccgacaccccacttattcac-tttaaggtga 1194707  T
Q  291 aattctctagct 302  Q
    | ||||||||||    
T  1194706 atttctctagct 1194695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University