View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_12 (Length: 481)
Name: NF20919_low_12
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 13 - 465
Target Start/End: Original strand, 8301378 - 8301831
Alignment:
| Q |
13 |
gagaccaagtgttgggttagcggaagtcataaatgataacagttgcaatcagaacgaccatcaacaagaaaagtagtcatgactaatatgattcatctct |
112 |
Q |
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| T |
8301378 |
gagaccaagtgttgggttagcggaagtcataaatgataacagttgcaatcagaacgaccatcaacaagaaaagtagtcatgactaatatgattcatctct |
8301477 |
T |
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| Q |
113 |
gggaatagagtcaccagcagaatcaccattagtgggaatagaagccactcatatgaaccatcagtgagaaa-taattgcatgacaaacaccaaagaagaa |
211 |
Q |
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| T |
8301478 |
gggaatagagtcaccagcagaatcaccattagtgggaataggagccactcatatgaaccatcagtgagaaaataattgcatgacaaacaccaaagaagaa |
8301577 |
T |
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| Q |
212 |
gccaacctcgcaacatataactcttcaacttttgaggacttcccaacagggtagggacaagtcaggtcacggaggatcaaaccaagccctgtggtccaag |
311 |
Q |
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| T |
8301578 |
gccaacctcgcaacatataactcttcaacttttgaggactttccaacagggtagggacaagtcaggtcacggaggatcaaaccaagccctgtggtctaag |
8301677 |
T |
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| Q |
312 |
aacaaaaatgattatgggttttagataaaataagaaatatgattatggtgtgtgcgtgtgggagagaaaataaattttttgggagtcacattaaacttga |
411 |
Q |
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| T |
8301678 |
aacaaaaatgattatgggttttagataaaataagaaatatgattatggtgtgtgcgtgtgggagagaaaataaattttttgggagtcacattaaacttga |
8301777 |
T |
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| Q |
412 |
caaattatattcaagatgtaaataacattgagggttgaaaatgagtggtctttt |
465 |
Q |
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| T |
8301778 |
caaattatattcaagatgtaaataacattgagggttgaaaatgagtggtctttt |
8301831 |
T |
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