View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_14 (Length: 458)
Name: NF20919_low_14
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Original strand, 37815316 - 37815756
Alignment:
| Q |
18 |
aataagaagctagttgtttctctaacataaccataaaacaatgacaattccaacacattgataatattcaattgaagttaaaatgacaaatttcaataga |
117 |
Q |
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| T |
37815316 |
aataagaagctagttgtttctctaacataaccataaaacaatgacaattccaacacattgataatattcaattgaagttaaaatgacaaatttcaataga |
37815415 |
T |
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| Q |
118 |
tttttcctactggcaccccgtttattcctaatttcaaaaactcccatttacctaacgctattaatgtatttagattggcttataatcaaaagcaactcta |
217 |
Q |
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| T |
37815416 |
tttttcctactggcaccccgtttattcctaatttcaaaaactcccatttacctaacactattaatgtatttagattggcttataatcaaaagcaactcta |
37815515 |
T |
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| Q |
218 |
tcctaaaaatttaattaagcaaatgtgaacaaagtatattaaaatttctataaaattgaataaataatctaaagagtgagaaaatataccgtcttacgca |
317 |
Q |
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| T |
37815516 |
tcctaaaaatttaattaagcaaatgtgaacaaagtatattaaaatttctataaaattgaataaataatctaaagagtaagaaaatataccgtcttacgca |
37815615 |
T |
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| Q |
318 |
tgctacgaaaatcactggacttaaactcattacgagcagatttctgaagacgaagcatgagcaactctcccttaagttcaacaacctcttcattgatttg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37815616 |
tgctacgaaaatcactggacttaaactcattacgagcagatttctgaagacgaagcatgaacaactctcccttaagttcaacaacctcttcattgatttg |
37815715 |
T |
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| Q |
418 |
ttcggtggttttagttctaatttgcttcaattcttcttctc |
458 |
Q |
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| T |
37815716 |
ttcggtggttttagttctaatttgcttcaattcttcttctc |
37815756 |
T |
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