View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20919_low_15 (Length: 457)
Name: NF20919_low_15
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 10 - 442
Target Start/End: Original strand, 36643067 - 36643493
Alignment:
| Q |
10 |
ataatactagcgaattgaatggatgtgccttgagagccacttcagcaaaatctacacagaacctctcatcttcttctttgtggtaacctacctatgctca |
109 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36643067 |
ataatactagtgaattgaatggatgtgccttgagagccacttcagcaaaatctacacagaacctctcatcttcttctttgtggtaaccta----tgctca |
36643162 |
T |
|
| Q |
110 |
aaggaacataacatttctctgatagaattcaaaaggaacatcgaagttttgagcttaacataaccatgtcattatctatgtctaccaccactagtggtca |
209 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36643163 |
aaggaacataacatttctctcatagaattcaaaaggaacatcgaagttctgagcttaaca--accatgtcattatctatgtccaccaccactagtggtca |
36643260 |
T |
|
| Q |
210 |
ctacactgcactttcattgccaacaagaaccacccaaatcaactctaagcaaaacccaacttannnnnnnccaaacaccaagttgttttcttcaaaaaac |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36643261 |
ctacactgcactttcattgccaacaagaaccacccaaatcaactctaagcaaaacccaacttatttttttccaaacaccaagttgttttcttcaaaaaac |
36643360 |
T |
|
| Q |
310 |
cattcattttccaacacccttttgtcaaaaccattcctttatgtggttaaagcttcatctgaagtgggttcagatgcatccaaagaagatagtgaaaagg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36643361 |
cattcattttccaacacccttttgtcaaaaccattcctttatgtggttaaagcttcatctgaagtgggttcagatgcatccaaagaagatagtgaaaagg |
36643460 |
T |
|
| Q |
410 |
gtgaaggagaaaaagagccatatgaagagtatg |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
36643461 |
gtgaaggagaaaaagagccatatgaagagtatg |
36643493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 10883285 - 10883209
Alignment:
| Q |
171 |
aaccatgtcattatctatgtctaccaccactagtggtcactacactgcactttcattgccaacaagaaccacccaaa |
247 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| || |||| |||||||||| ||||||| ||||| |
|
|
| T |
10883285 |
aaccatgtcattatctatgtttaccaccactagtggtcactactttggacttacattgccaaccagaaccatccaaa |
10883209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 10883734 - 10883688
Alignment:
| Q |
12 |
aatactagcgaattgaatggatgtgccttgagagccacttcagcaaa |
58 |
Q |
| |
|
||||| || |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10883734 |
aataccagtgaattgaatggatgtgccttgagaaccacttcagcaaa |
10883688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 43172570 - 43172500
Alignment:
| Q |
196 |
accactagtggtc----actacactgcactttcattgccaacaagaaccacccaaatcaactctaagcaaa |
262 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43172570 |
accactagtggtcactaactaccctgcactttcattgccaacaagaaccacccaaatccactctaagcaaa |
43172500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 396
Target Start/End: Complemental strand, 43172466 - 43172396
Alignment:
| Q |
326 |
cccttttgtcaaaaccattcctttatgtggttaaagcttcatctgaagtgggttcagatgcatccaaagaa |
396 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||||||||| ||| || | ||| | |||||||||||| |
|
|
| T |
43172466 |
cccttttgtcaaaaccattcctatttgtggataaagcttcatgtgaggtttggtcaaaagcatccaaagaa |
43172396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University