View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20919_low_16 (Length: 452)

Name: NF20919_low_16
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20919_low_16
NF20919_low_16
[»] chr2 (3 HSPs)
chr2 (16-436)||(35508591-35509003)
chr2 (113-183)||(12545047-12545115)
chr2 (34-76)||(31069605-31069647)
[»] chr3 (4 HSPs)
chr3 (113-217)||(26255437-26255542)
chr3 (113-183)||(7808356-7808426)
chr3 (32-76)||(52733664-52733708)
chr3 (31-217)||(54605369-54605553)
[»] chr1 (2 HSPs)
chr1 (119-217)||(22059883-22059982)
chr1 (25-81)||(10023828-10023884)
[»] chr7 (4 HSPs)
chr7 (129-217)||(5220258-5220347)
chr7 (16-82)||(18101781-18101847)
chr7 (115-163)||(6035430-6035478)
chr7 (25-69)||(3582086-3582130)
[»] chr4 (5 HSPs)
chr4 (113-182)||(22337044-22337113)
chr4 (113-201)||(10418285-10418373)
chr4 (114-219)||(23971632-23971738)
chr4 (32-81)||(2488514-2488563)
chr4 (120-166)||(21761386-21761432)
[»] chr8 (5 HSPs)
chr8 (120-183)||(34391109-34391172)
chr8 (124-217)||(30869775-30869869)
chr8 (117-166)||(6083038-6083087)
chr8 (117-217)||(6429427-6429528)
chr8 (113-165)||(19379019-19379071)
[»] chr5 (1 HSPs)
chr5 (133-183)||(30970746-30970796)
[»] chr6 (2 HSPs)
chr6 (113-166)||(8692553-8692606)
chr6 (133-217)||(13005720-13005805)


Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 436
Target Start/End: Complemental strand, 35509003 - 35508591
Alignment:
Q  16 atgtcaccatttcaggatctccacaaggaccacacaacagtttgccaaattaatgagaaacataacatcttcttcccttcatcgaagtctaacatatata 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  35509003 atgtcaccatttcaggatctccacaaggaccacacaacagtttgccaaattaatgagaaacataacatcttct---cttcatcgaagtctaacatatata 35508907  T
Q  116 atactaagaagacttgataaatctgaaggtaaaacaaactcttaccccaactatctaaacacatgatatcacgcttgacctaaaaatgacatctaacaaa 215  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  35508906 atactaagaagacttgataaatctgaagataaaacaaactcttaccccaactatctaaacacatgatgtcacgcttgacttaaaaatgacatctaacaaa 35508807  T
Q  216 aacgcgactcgagtaccaagttcaatttctacttatgtacaataaaattgcacaaaagatacaaactgatatggagtgtgtccttaccttgtggcgaagt 315  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35508806 aatgcgactcgagtaccaagttcaatttctacttatgtacaataaaattgcacaaaagatacaaactgatatggagtgtgtccttaccttgtggcgaagt 35508707  T
Q  316 taatgacattatannnnnnnnnnnnnnaagaagttaatggcattattgttgatatagtataatagaagaaatacagacnnnnnnnnnnnntaatagaaga 415  Q
    ||||||||||| |              ||||||||||||||||||||||||||||| |||||||||||||||||||||            ||||||||||    
T  35508706 taatgacattaca----ttttttttttaagaagttaatggcattattgttgatataatataatagaagaaatacagac-aaaaaaatatataatagaaga 35508612  T
Q  416 aattaatgttcaattaaatac 436  Q
    |||||||||||||||||||||    
T  35508611 aattaatgttcaattaaatac 35508591  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 12545047 - 12545115
Alignment:
Q  113 ataatactaagaagacttgataaatctgaaggtaaaacaaactcttaccccaactatctaaacacatgata 183  Q
    |||||||||||||| |  | ||||||||||||||||||||||||| || ||||| ||||||||||||||||    
T  12545047 ataatactaagaagtc--gctaaatctgaaggtaaaacaaactctcactccaaccatctaaacacatgata 12545115  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 31069647 - 31069605
Alignment:
Q  34 ctccacaaggaccacacaacagtttgccaaattaatgagaaac 76  Q
    ||||||||||||||||||| |||||| ||||||||| ||||||    
T  31069647 ctccacaaggaccacacaagagtttgtcaaattaataagaaac 31069605  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 26255437 - 26255542
Alignment:
Q  113 ataatactaagaagacttgataaatctgaaggtaaaacaaactcttaccccaactatctaaacacatgatatcacgcttga-cctaaaaatgacatctaa 211  Q
    ||||||||||||||||| | |||||||||||||||||||||| |  |||||||| |||||||||||||||| ||| ||||| || ||||| |||||||||    
T  26255437 ataatactaagaagactcgttaaatctgaaggtaaaacaaacacccaccccaaccatctaaacacatgataccacacttgacccaaaaaaggacatctaa 26255536  T
Q  212 caaaaa 217  Q
    ||||||    
T  26255537 caaaaa 26255542  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 7808356 - 7808426
Alignment:
Q  113 ataatactaagaagacttgataaatctgaaggtaaaacaaactcttaccccaactatctaaacacatgata 183  Q
    |||||||||||||| || | ||||| |||  |||||||||| ||  |||||||||||||||||||||||||    
T  7808356 ataatactaagaaggctcgttaaatttgattgtaaaacaaattcccaccccaactatctaaacacatgata 7808426  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 52733664 - 52733708
Alignment:
Q  32 atctccacaaggaccacacaacagtttgccaaattaatgagaaac 76  Q
    ||||| ||||||||||||||||||||||||| |||||| ||||||    
T  52733664 atctctacaaggaccacacaacagtttgccagattaataagaaac 52733708  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 217
Target Start/End: Complemental strand, 54605553 - 54605369
Alignment:
Q  31 gatctccacaaggaccacacaacagtttgccaaattaatgagaaacataacatct----tcttcccttcatcgaagtctaacatatataatactaagaag 126  Q
    |||||||| |||||||||||||||||||| |  |||||| |||||| |||| |||    | |||||  |||  ||||||||||||    |||||||||      
T  54605553 gatctccataaggaccacacaacagtttgtcggattaataagaaacctaacctctcattttttccccacat--aagtctaacata----atactaagagt 54605460  T
Q  127 acttgataaatctgaaggtaaaacaaactcttaccccaactatctaaacacatgatatcacgcttgacctaaaaatgacatctaacaaaaa 217  Q
    ||  | ||||| ||||||||||||||||||| |||  ||| |  |||||||||||||| ||    |||||||||| ||||||||| |||||    
T  54605459 acacgctaaatttgaaggtaaaacaaactctcaccttaaccacttaaacacatgatattacatccgacctaaaaaggacatctaagaaaaa 54605369  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 22059982 - 22059883
Alignment:
Q  119 ctaagaagacttgataaatctgaaggtaaaacaaactcttaccccaactatctaaacacatgatatcac-gcttgacctaaaaatgacatctaacaaaaa 217  Q
    ||||||| ||| | ||||||||||||||||| ||||||| |||||||| | | |||||||||||| |||  || | | ||||||||||||||||||||||    
T  22059982 ctaagaatactcgctaaatctgaaggtaaaataaactctcaccccaaccacccaaacacatgataccacacctcgccttaaaaatgacatctaacaaaaa 22059883  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 10023884 - 10023828
Alignment:
Q  25 tttcaggatctccacaaggaccacacaacagtttgccaaattaatgagaaacataac 81  Q
    ||||||||| ||||||||||||||||||||| |||||| |||||| |||||| ||||    
T  10023884 tttcaggatttccacaaggaccacacaacagattgccagattaataagaaacctaac 10023828  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 5220347 - 5220258
Alignment:
Q  129 ttgataaatctgaaggtaaaacaaactcttaccccaactatctaaacacatgatatcacgcttgacctaa-aaatgacatctaacaaaaa 217  Q
    |||||| ||||||||||||| | |||||| | |||||| | |||||||||||||| ||| |||| ||||| ||| |||||||||||||||    
T  5220347 ttgatagatctgaaggtaaacctaactctcagcccaaccacctaaacacatgataccacacttggcctaagaaaggacatctaacaaaaa 5220258  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 18101847 - 18101781
Alignment:
Q  16 atgtcaccatttcaggatctccacaaggaccacacaacagtttgccaaattaatgagaaacataaca 82  Q
    |||| ||||||| | ||||| |||||||||||||||| ||||||| |||||||| |||||| |||||    
T  18101847 atgtgaccattttatgatcttcacaaggaccacacaatagtttgctaaattaataagaaacctaaca 18101781  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 6035478 - 6035430
Alignment:
Q  115 aatactaagaagacttgataaatctgaaggtaaaacaaactcttacccc 163  Q
    ||||||||||||||| | ||||||||| ||||||||||||||| |||||    
T  6035478 aatactaagaagactcgttaaatctgatggtaaaacaaactctcacccc 6035430  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 3582086 - 3582130
Alignment:
Q  25 tttcaggatctccacaaggaccacacaacagtttgccaaattaat 69  Q
    ||||||||| |||||||||||||||||| || |||||| ||||||    
T  3582086 tttcaggatatccacaaggaccacacaatagattgccagattaat 3582130  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 22337044 - 22337113
Alignment:
Q  113 ataatactaagaagacttgataaatctgaaggtaaaacaaactcttaccccaactatctaaacacatgat 182  Q
    |||| |||||||||||||| || ||||||||||||||| |||||  | |||||| |||||||||||||||    
T  22337044 ataaaactaagaagacttgctagatctgaaggtaaaactaactcccatcccaaccatctaaacacatgat 22337113  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 10418373 - 10418285
Alignment:
Q  113 ataatactaagaagacttgataaatctgaaggtaaaacaaactcttaccccaactatctaaacacatgatatcacgcttgacctaaaaa 201  Q
    ||||||||||||| ||| | ||||| || |||| ||||||||||| |||||||  | ||||||||| |||| ||| |||||||||||||    
T  10418373 ataatactaagaaaactggttaaatatggaggtgaaacaaactctcaccccaatcacctaaacacacgataccacacttgacctaaaaa 10418285  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 23971738 - 23971632
Alignment:
Q  114 taatactaagaagacttgataaatctgaaggtaaaacaaactcttaccccaactatctaaacacatgatatcacgcttgacct-aaaaatgacatctaac 212  Q
    ||||||||||||||||   ||||| ||||||||||||||||||| ||||||||   | |||||||||||| ||| | ||  || |||||||  |||||||    
T  23971738 taatactaagaagactcactaaatttgaaggtaaaacaaactctcaccccaacctccaaaacacatgataccacacctggtctaaaaaatggtatctaac 23971639  T
Q  213 aaaaacg 219  Q
    |||||||    
T  23971638 aaaaacg 23971632  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 2488563 - 2488514
Alignment:
Q  32 atctccacaaggaccacacaacagtttgccaaattaatgagaaacataac 81  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||| ||||    
T  2488563 atctccacatggaccacacaacagattgccaaattaataagaaacttaac 2488514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 21761432 - 21761386
Alignment:
Q  120 taagaagacttgataaatctgaaggtaaaacaaactcttaccccaac 166  Q
    |||||||||| ||||||| ||||||||||||| ||||||| ||||||    
T  21761432 taagaagactcgataaatttgaaggtaaaacacactcttatcccaac 21761386  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 34391172 - 34391109
Alignment:
Q  120 taagaagacttgataaatctgaaggtaaaacaaactcttaccccaactatctaaacacatgata 183  Q
    |||||| ||||| ||||||||||||||||||||||||  |||||||| | |||| |||||||||    
T  34391172 taagaatacttgttaaatctgaaggtaaaacaaactcccaccccaaccacctaagcacatgata 34391109  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 217
Target Start/End: Complemental strand, 30869869 - 30869775
Alignment:
Q  124 aagacttgataaatctgaaggtaaaacaaactcttaccccaactatctaaacacatgatatcacgcttgacctaaaaa-tgacatctaacaaaaa 217  Q
    |||||||| || ||||||| ||||||  |||||| |||| ||| | ||||||||||| || ||| | ||||||||||| ||||||||||||||||    
T  30869869 aagacttgctagatctgaatgtaaaattaactctcaccctaaccacctaaacacatgctaccacacctgacctaaaaactgacatctaacaaaaa 30869775  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 6083038 - 6083087
Alignment:
Q  117 tactaagaagacttgataaatctgaaggtaaaacaaactcttaccccaac 166  Q
    ||||||||||||| ||||||| ||||||||||||||||||  ||||||||    
T  6083038 tactaagaagactcgataaatttgaaggtaaaacaaactcccaccccaac 6083087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 6429427 - 6429528
Alignment:
Q  117 tactaagaagacttgataaatctgaaggtaaaacaaactcttaccccaactatctaaacacatgatatcacgcttgacct-aaaaatgacatctaacaaa 215  Q
    ||||||||||||||| ||| | || ||||||||||||||||  ||||||| | |||| |||| |||| ||| | |||| | |||||||||||||| ||||    
T  6429427 tactaagaagacttgttaagtatggaggtaaaacaaactctccccccaaccacctaagcacacgataccacacctgacttaaaaaatgacatctagcaaa 6429526  T
Q  216 aa 217  Q
    ||    
T  6429527 aa 6429528  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 19379019 - 19379071
Alignment:
Q  113 ataatactaagaagacttgataaatctgaaggtaaaacaaactcttaccccaa 165  Q
    |||| ||||||||||||   ||||||||||||||||||||||||  |||||||    
T  19379019 ataaaactaagaagactcactaaatctgaaggtaaaacaaactcccaccccaa 19379071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 30970746 - 30970796
Alignment:
Q  133 taaatctgaaggtaaaacaaactcttaccccaactatctaaacacatgata 183  Q
    ||||||| |||||||||| |||||  |||||||||| ||||||||||||||    
T  30970746 taaatctaaaggtaaaactaactcccaccccaactacctaaacacatgata 30970796  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 8692553 - 8692606
Alignment:
Q  113 ataatactaagaagacttgataaatctgaaggtaaaacaaactcttaccccaac 166  Q
    |||| |||||||||||| | ||||||| |||||||||| |||||| ||||||||    
T  8692553 ataaaactaagaagactcgctaaatctaaaggtaaaaccaactctcaccccaac 8692606  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 13005805 - 13005720
Alignment:
Q  133 taaatctgaaggtaaaacaaactcttaccccaactatctaaacacatgatatcacgcttgacct-aaaaatgacatctaacaaaaa 217  Q
    ||||||||||||||||||||| ||| |||||||| |  |||||||| |||| ||  | |||| | ||||| |||||||||||||||    
T  13005805 taaatctgaaggtaaaacaaattctcaccccaaccacttaaacacaagataccaaacctgacttaaaaaaggacatctaacaaaaa 13005720  T

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