View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_17 (Length: 449)
Name: NF20919_low_17
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Original strand, 531029 - 531448
Alignment:
| Q |
18 |
cttatttacaatcaaaaaaggaagtgtttcttaaagcattgaatacatgtgctaggatcaaaataactgaccctaatccacaatgggacatggagactat |
117 |
Q |
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| T |
531029 |
cttatttacaatcaaaaaaggaagtgtttcttaaagcattgaatacatgtgctaggatcaaaataactgaccctaatccacaatgggacatggagactat |
531128 |
T |
|
| Q |
118 |
gccatcgcctagagtcatgagtgacatggtgatgcttccaaatggtaacattttgataattaatggggcttcttcggggacatctggatgggaacaaggt |
217 |
Q |
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| T |
531129 |
gccatcgcctagagtcatgagtgacatggtgatgcttccaaatggtaacattttgataattaatggggcttcttcggggacatctggatgggaacaaggt |
531228 |
T |
|
| Q |
218 |
cgtgacccggctctaaccccatttctttaccgaacaaataatccaattgggtcgagattcaaattgcaaagatcatcgaagacacctcgaatgtatcatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
531229 |
cgtgacccggctctaaccccatttctttaccgaacaaataatccaattgggtcgagattcaaattgcaaagatcatcggagacgcctcgaatgtatcatt |
531328 |
T |
|
| Q |
318 |
ccactgctgttttggttcgtgatgggagggttttggttggtggtagtaaccctcattcgggttacaatttcacaaatgttttgtttccaaccaagcttag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
531329 |
ccactgctgttttggttcgtgatgggagggttttggttggtggtagtaaccctcattcgggttacagtttcacaaatgttttgtttccaactgagcttag |
531428 |
T |
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| Q |
418 |
cattgaggcatattcacctt |
437 |
Q |
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| T |
531429 |
cattgaagcatattcacctt |
531448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 299 - 408
Target Start/End: Original strand, 7571151 - 7571260
Alignment:
| Q |
299 |
acacctcgaatgtatcattccactgctgttttggttcgtgatgggagggttttggttggtggtagtaaccctcattcgggttacaatttcacaaatgttt |
398 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||| | ||||||||||| |||||||| ||||||||||| | ||||| | |
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| T |
7571151 |
acacctcgaatgtatcattccactgcaattttggttcgtgatggtagggttcttgttggtggtagcaaccctcacattggttacaattttaacaatgtgt |
7571250 |
T |
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| Q |
399 |
tgtttccaac |
408 |
Q |
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| T |
7571251 |
tgtttccaac |
7571260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 7570895 - 7571035
Alignment:
| Q |
43 |
gtttcttaaagcattgaatacatgtgctaggatcaaaataactgaccctaatccacaatgggacatggagactatgccatcgcctagagtcatgagtgac |
142 |
Q |
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| T |
7570895 |
gtttcttggagctttgaatacttgtgcccgaatcaaaataaccgacccaaatccaacatgggttgtggagaccatgcctagggctagagtaatgggtgac |
7570994 |
T |
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| Q |
143 |
atggtgatgcttccaaatggtaacattttgataattaatgg |
183 |
Q |
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||||| ||||| |||||||| | |||||||||||||||| |
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| T |
7570995 |
atggtaatgctcccaaatggggatgttttgataattaatgg |
7571035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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