View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_18 (Length: 437)
Name: NF20919_low_18
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 7 - 421
Target Start/End: Original strand, 2488743 - 2489157
Alignment:
| Q |
7 |
atgaagaagatacaaattcaagataacaagaaccatatcatggaagtgttagcagccaatgatcttgattgtcatgacctggattccatctgtgtagcag |
106 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2488743 |
atgaagaagatacagattcaagataacaagaaccatatcatggaagtgttagcagccaatgatcttgattgtcatgacctggattccatctgtgtagcag |
2488842 |
T |
|
| Q |
107 |
acacaatggttctcagtaactatatagaagagattatcgtgtcagcaatttcgtatcatttaatgaagaacaaagagcctgaatacagaaatggaaaact |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2488843 |
acacaatggttctcagtaactatatagaagagattatcgtgtcagcaatttcgtatcatataatgaagaacaaagagcctgaatacagaaatggaaaact |
2488942 |
T |
|
| Q |
207 |
gatcattccatgcaacaggttagaccggcaaattttgctgcatgagcaatctaacttttatatacttacttaattgtatttcgaaacagtttgtcccatg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2488943 |
gatcattccatgcaacaggttagaccggcaaattttgctgcatgaacaatctaacttttatatacttacttaattgtatttcgaaacagtttgtcccatg |
2489042 |
T |
|
| Q |
307 |
ctctgggaatattccaggcgggaaaattcagtgacagagattcattgaagttagaagctcaagcagtaacatctgaggtttgcagtgcttgtcgttattg |
406 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489043 |
ctctgggaatattccaggcgggaaaattcggtgacagagattcattgaagttagaagctcaagcagtaacatctgaggtttgcagtgcttgtcgttattg |
2489142 |
T |
|
| Q |
407 |
tatttagttgtgaat |
421 |
Q |
| |
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||||||||||||||| |
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| T |
2489143 |
tatttagttgtgaat |
2489157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 41592430 - 41592228
Alignment:
| Q |
7 |
atgaagaagatacaaattcaagataacaagaaccatatcatggaagtgttagcagccaatgatcttgattgtcatgacctggattccatctgtgtagcag |
106 |
Q |
| |
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||||||| ||||||| |||| ||||| || || ||||| | ||||||| | |||||||||||||||||||| ||||| |||||||||||||||| | || |
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|
| T |
41592430 |
atgaagatgatacaagttcaggataataaaaatcatattacggaagtgcttgcagccaatgatcttgattgcgatgacttggattccatctgtgtggaag |
41592331 |
T |
|
| Q |
107 |
acacaatggttctcagtaactatatagaagagattatcgtgtcagcaatttcgtatcatttaatgaagaacaaagagcctgaatacagaaatggaaaact |
206 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||| ||||| |||||||| | |||||||||||||| || || |
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| T |
41592330 |
acacaatggttctcagtaactatatagaagagattattgtgtcagcaatctctcatcatttgatgaaaaacaaagacctcgaatacagaaatgggaagct |
41592231 |
T |
|
| Q |
207 |
gat |
209 |
Q |
| |
|
||| |
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|
| T |
41592230 |
gat |
41592228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 8842970 - 8842865
Alignment:
| Q |
31 |
aacaagaaccatatcatggaagtgttagcagccaatgatcttgattgtcatgacctggattccatctgtgtagcagacacaatggttctcagtaactata |
130 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| |||||||| ||||||| | ||||||||||||||||| |||||||||||||| ||||||| | |
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|
| T |
8842970 |
aacaagaaccatatcatggaagtccttgcagccaattatcttgatattcatgacattgattccatctgtgtagcggacacaatggttctttgtaactaca |
8842871 |
T |
|
| Q |
131 |
tagaag |
136 |
Q |
| |
|
|||||| |
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|
| T |
8842870 |
tagaag |
8842865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 32248453 - 32248412
Alignment:
| Q |
63 |
caatgatcttgattgtcatgacctggattccatctgtgtagc |
104 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
32248453 |
caatgatctcgattgtcatgacctggattccatctgtgtagc |
32248412 |
T |
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