View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_19 (Length: 417)
Name: NF20919_low_19
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_19 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Complemental strand, 19706787 - 19706385
Alignment:
| Q |
16 |
accataggcaagaattatcacctgcttatagtctnnnnnnntgataagcatacaaaaagtcttaactcactgtccattaagagcattacgtaaattaact |
115 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19706787 |
accataggcaagaattatcacctgcttatagtctaaaaaaatgataagcatacaaaaagtcttaactcactgtccattaagagcattacgtaaattaact |
19706688 |
T |
|
| Q |
116 |
tcaaattgggacactaatagtaattgtaaaatgaaaaatcaacattaagtattcaatacaactcaaataattcacctactagatgaagaaagtagcaaag |
215 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19706687 |
ttaaattgggacactaatagtaattgtaaaatgaaaaatcaacattaagtattcaatacaactcaaataattcacctagtagatgaagaaagtagcaaag |
19706588 |
T |
|
| Q |
216 |
caacacagggaaccaagggctatgttaaggttatttaagttagtagacaaaaacggagaaccaaatgccaccaaattcaattttaaatgaataaataata |
315 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19706587 |
caacacagggaaccaagggctatgttaaggttattt--gttagtaggcaaaaacggagaaccaaatgccaccaaattcaattttaaatgaataaataata |
19706490 |
T |
|
| Q |
316 |
acaaggcaacatgactattcaggaatagatcatacaattgtttagaaac---atagacatctttaactcgttatgatttttaaagtacatacccatttga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||| |
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| T |
19706489 |
acaaggcaacatgactattcaggaatagatcatacaatggtttagaaacaaaatagacaacttttactggttatgatttttaaagtacatacccatttga |
19706390 |
T |
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| Q |
413 |
tttcc |
417 |
Q |
| |
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||||| |
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| T |
19706389 |
tttcc |
19706385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 58 - 417
Target Start/End: Complemental strand, 19465451 - 19465090
Alignment:
| Q |
58 |
gataagcatacaaaaagtcttaactcactgtccattaagagcattacgtaaattaacttcaaattgggacactaatagtaattgtaaaatgaaaaatcaa |
157 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| || |||| |
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| T |
19465451 |
gataagcatacaaaaaatcttaactcactgtccattaacagcattacgtaaattaacttcaaattgggacagtaatagtaattgtacaatgacaagtcaa |
19465352 |
T |
|
| Q |
158 |
cattaagtattcaatacaactcaaataattcacctactagatgaagaaagtagcaaagcaacacagggaaccaagggctatgttaaggttatttaagtta |
257 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||| |
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| T |
19465351 |
cattaagtattcaataca-ctcaaataattcacctagtagatgaagaaagtagcaaagcaacaaagaaaaccaagggctatgtcaaggttatttaagttg |
19465253 |
T |
|
| Q |
258 |
gtagacaaaaacggagaaccaaatgccaccaaattcaattttaaatgaataaataataacaaggcaacatgactattcaggaatagatcatacaattgtt |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| |||||||| ||| |
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| T |
19465252 |
gtagacaaaaacggagaaccaaatgccaccaaattcaatttgaaatgaataaataataacaaggcagcatgactattcaagaatagaacatacaatggtt |
19465153 |
T |
|
| Q |
358 |
tagaaac---atagacatctttaactcgttatgatttttaaagtacatacccatttgatttcc |
417 |
Q |
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||||||| || ||||||||| ||| |||||||||||||| ||||||||| ||||||||||| |
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| T |
19465152 |
tagaaactaaatggacatcttttactggttatgatttttaacgtacatacctatttgatttcc |
19465090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 58 - 417
Target Start/End: Complemental strand, 19563131 - 19562770
Alignment:
| Q |
58 |
gataagcatacaaaaagtcttaactcactgtccattaagagcattacgtaaattaacttcaaattgggacactaatagtaattgtaaaatgaaaaatcaa |
157 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| || |||| |
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| T |
19563131 |
gataagcatacaaaaaatcttaactcactgtccattaacagcattacgtaaattaacttcaaattgggacagtaatagtaattgtacaatgacaagtcaa |
19563032 |
T |
|
| Q |
158 |
cattaagtattcaatacaactcaaataattcacctactagatgaagaaagtagcaaagcaacacagggaaccaagggctatgttaaggttatttaagtta |
257 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||| |
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| T |
19563031 |
cattaagtattcaataca-ctcaaataattcacctagtagatgaagaaagtagcaaagcaacaaagaaaaccaagggctatgtcaaggttatttaagttg |
19562933 |
T |
|
| Q |
258 |
gtagacaaaaacggagaaccaaatgccaccaaattcaattttaaatgaataaataataacaaggcaacatgactattcaggaatagatcatacaattgtt |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| |||||||| ||| |
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| T |
19562932 |
gtagacaaaaacggagaaccaaatgccaccaaattcaatttgaaatgaataaataataacaaggcagcatgactattcaagaatagaacatacaatggtt |
19562833 |
T |
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| Q |
358 |
tagaaac---atagacatctttaactcgttatgatttttaaagtacatacccatttgatttcc |
417 |
Q |
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||||||| || ||||||||| ||| |||||||||||||| ||||||||| ||||||||||| |
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| T |
19562832 |
tagaaactaaatggacatcttttactggttatgatttttaacgtacatacctatttgatttcc |
19562770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 58 - 417
Target Start/End: Complemental strand, 22004170 - 22003809
Alignment:
| Q |
58 |
gataagcatacaaaaagtcttaactcactgtccattaagagcattacgtaaattaacttcaaattgggacactaatagtaattgtaaaatgaaaaatcaa |
157 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| || |||| |
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| T |
22004170 |
gataagcatacaaaaaatcttaactcactgtccattaacagcattacgtaaattaacttcaaattgggacagtaatagtaattgtacaatgacaagtcaa |
22004071 |
T |
|
| Q |
158 |
cattaagtattcaatacaactcaaataattcacctactagatgaagaaagtagcaaagcaacacagggaaccaagggctatgttaaggttatttaagtta |
257 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||| |
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| T |
22004070 |
cattaagtattcaataca-ctcaaataattcacctagtagatgaagaaagtagcaaagcaacaaagaaaaccaagggctatgtcaaggttatttaagttg |
22003972 |
T |
|
| Q |
258 |
gtagacaaaaacggagaaccaaatgccaccaaattcaattttaaatgaataaataataacaaggcaacatgactattcaggaatagatcatacaattgtt |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| |||||||| ||| |
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| T |
22003971 |
gtagacaaaaacggagaaccaaatgccaccaaattcaatttgaaatgaataaataataacaaggcatcatgactattcatgaatagaacatacaatggtt |
22003872 |
T |
|
| Q |
358 |
tagaaac---atagacatctttaactcgttatgatttttaaagtacatacccatttgatttcc |
417 |
Q |
| |
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||||||| || ||||||||| ||| |||||||||||||| ||||||||| ||||||||||| |
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|
| T |
22003871 |
tagaaactaaatggacatcttttactggttatgatttttaacgtacatacctatttgatttcc |
22003809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 58 - 417
Target Start/End: Complemental strand, 22010441 - 22010080
Alignment:
| Q |
58 |
gataagcatacaaaaagtcttaactcactgtccattaagagcattacgtaaattaacttcaaattgggacactaatagtaattgtaaaatgaaaaatcaa |
157 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| || |||| |
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|
| T |
22010441 |
gataagcatacaaaaaatcttaactcactgtccattaacagcattacgtaaattaacttcaaattgggacagtaatagtaattgtacaatgacaagtcaa |
22010342 |
T |
|
| Q |
158 |
cattaagtattcaatacaactcaaataattcacctactagatgaagaaagtagcaaagcaacacagggaaccaagggctatgttaaggttatttaagtta |
257 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||| |
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|
| T |
22010341 |
cattaagtattcaataca-ctcaaataattcacctagtagatgaagaaagtagcaaagcaacaaagaaaaccaagggctatgtcaaggttatttaagttg |
22010243 |
T |
|
| Q |
258 |
gtagacaaaaacggagaaccaaatgccaccaaattcaattttaaatgaataaataataacaaggcaacatgactattcaggaatagatcatacaattgtt |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| |||||||| ||| |
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| T |
22010242 |
gtagacaaaaacggagaaccaaatgccaccaaattcaatttgaaatgaataaataataacaaggcagcatgactattcaagaatagaacatacaatggtt |
22010143 |
T |
|
| Q |
358 |
tagaaac---atagacatctttaactcgttatgatttttaaagtacatacccatttgatttcc |
417 |
Q |
| |
|
||||||| || ||||||||| ||| |||||||||||||| ||||||||| ||||||||||| |
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|
| T |
22010142 |
tagaaactaaatggacatcttttactggttatgatttttaacgtacatacctatttgatttcc |
22010080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 10910429 - 10910331
Alignment:
| Q |
119 |
aattgggacactaatagtaattgtaaaatgaaaaatcaacattaagtattcaatacaactcaaataattcacctactagatgaagaaagtagcaaagcaa |
218 |
Q |
| |
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|||||||| | |||||||||||||| || || || | ||||||||| ||||| |||| |||||||||||||||| |||||| | |||||| |||||||| |
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| T |
10910429 |
aattgggatagtaatagtaattgtacaacgacaagttaacattaagcattcattaca-ctcaaataattcacctggtagatggataaagtaacaaagcaa |
10910331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 10912884 - 10912843
Alignment:
| Q |
176 |
actcaaataattcacctactagatgaagaaagtagcaaagca |
217 |
Q |
| |
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|||||||||||||||||| | |||||||||||||| |||||| |
|
|
| T |
10912884 |
actcaaataattcacctagtggatgaagaaagtaggaaagca |
10912843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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