View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20919_low_2 (Length: 752)

Name: NF20919_low_2
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20919_low_2
NF20919_low_2
[»] chr1 (9 HSPs)
chr1 (16-742)||(30208109-30208835)
chr1 (94-181)||(30207866-30207952)
chr1 (294-374)||(51479437-51479517)
chr1 (399-460)||(51454862-51454923)
chr1 (409-461)||(51496349-51496401)
chr1 (299-374)||(51496415-51496490)
chr1 (94-146)||(26661567-26661619)
chr1 (235-371)||(51454930-51455062)
chr1 (96-146)||(41157054-41157104)
[»] chr8 (4 HSPs)
chr8 (94-182)||(11442914-11443002)
chr8 (94-186)||(40991814-40991905)
chr8 (91-186)||(30737624-30737718)
chr8 (96-146)||(5915930-5915980)
[»] chr2 (5 HSPs)
chr2 (94-191)||(2336685-2336781)
chr2 (95-183)||(2803175-2803262)
chr2 (106-172)||(39693927-39693990)
chr2 (96-146)||(28254282-28254332)
chr2 (96-142)||(36005929-36005975)
[»] chr4 (6 HSPs)
chr4 (94-186)||(29802602-29802693)
chr4 (112-186)||(53667335-53667408)
chr4 (119-185)||(30249789-30249854)
chr4 (96-146)||(36629300-36629350)
chr4 (94-175)||(2041142-2041222)
chr4 (113-170)||(31957580-31957636)
[»] scaffold0002 (3 HSPs)
scaffold0002 (652-723)||(410994-411065)
scaffold0002 (479-537)||(422487-422545)
scaffold0002 (460-530)||(426477-426547)
[»] chr3 (1 HSPs)
chr3 (95-182)||(50329342-50329428)
[»] chr5 (1 HSPs)
chr5 (94-146)||(32445946-32445998)
[»] chr7 (2 HSPs)
chr7 (94-146)||(4124133-4124185)
chr7 (96-146)||(37533056-37533105)
[»] chr6 (4 HSPs)
chr6 (96-146)||(3409322-3409372)
chr6 (96-146)||(10074036-10074086)
chr6 (96-146)||(10074408-10074458)
chr6 (106-151)||(2344980-2345025)


Alignment Details
Target: chr1 (Bit Score: 687; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 16 - 742
Target Start/End: Original strand, 30208109 - 30208835
Alignment:
Q  16 gaaagaacttccacttaagggagagcataaatgaatttacatactcacacttgaggggggagattgttgtgtagcaaatgagaggacccttaaactcaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30208109 gaaagaacttccacttaagggagagcataaatgaatttacatactcacatttgaggggggagattgttgtgtagcaaatgagaggacccttaaactcaat 30208208  T
Q  116 gcattaaggttttgggttaaagtgtggtgtccaaactcacttgtctggttgctctgagcccaatgtggatggtcacaaccctcgttacccaagacaagac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  30208209 gcattaaggttttgggttaaagtgtggtgtccaaactcacttgccaggttgctctgagcccaatgtggatggtcacaacccttgtgacccaagacaagac 30208308  T
Q  216 aagataaccaacaactgaggaagcacgttaaacagaataaaacataagttaaggaagttgtacgtaccaacggttaatacaaagtatgcaaaatttcttc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30208309 aagataaccaacaactgaggaagcacgttaaacagaataaaacataagttaaggaagttgtacgtaccaacggttaatacaaagtatgcaaaatttcttc 30208408  T
Q  316 cggtcgcatttcgtgcatttcacaaccctgcccttgtcatttcttttacattgatggcaattagtgtccttattacagaccaataaggacccatcttcga 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30208409 cggtcgcatttcgtgcatttcacaaccctgcccttgtcatttcttttacattgatggcaattagtgtccttattacagaccaataaggacccatcttcaa 30208508  T
Q  416 tcccctattgattgagaaacagtaacagaaccacaattacatacaatacaacatgtaactcaaaattcaaacatatatctacaacatgaaataaaaatta 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30208509 tcccctattgattgagaaacagtaacagaaccacaattacatacaatacaacatgtaactcaaaattcaaacatatatctacaacatgaaataaaaatta 30208608  T
Q  516 acaaaaagatcatatgatgttaccatctgttgctgttcaatgcattcagaattctccccctcctgagcagcattgatttcatcagtaacaccaacaccgg 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30208609 acaaaaagatcatatgatgttaccatctgttgctgttcaatgcattcaggattctccccctcctgagcagcattgatttcatcagtaacaccaacaccgg 30208708  T
Q  616 ttgccaccttcttcttcctaccacgtttccccttgatcttcttaacttccagctcctcctctacatctgacaagtaatcctcgttcaatgatctgctact 715  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30208709 ttgccaccttcttcttcctaccacgtttccccttaatcttcttaacttccagctcctcctctacatctaacaagtaatcctcgttcaatgatctgctact 30208808  T
Q  716 cttcttggcacgctcacttcatctcac 742  Q
    |||||||||||||||||||| ||||||    
T  30208809 cttcttggcacgctcacttcttctcac 30208835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 94 - 181
Target Start/End: Original strand, 30207866 - 30207952
Alignment:
Q  94 tgagaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtccaaactcacttgtctggttgctctgagcccaatgt 181  Q
    |||||||| || ||||| || ||| |||||||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||    
T  30207866 tgagaggatccataaac-cactgccttaaggttttgggttacagtgtggtatccaaactcacctgtgtggttgctctgagcccaatgt 30207952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 294 - 374
Target Start/End: Complemental strand, 51479517 - 51479437
Alignment:
Q  294 acaaagtatgcaaaatttcttccggtcgcatttcgtgcatttcacaaccctgcccttgtcatttcttttacattgatggca 374  Q
    |||| ||||||||||| | ||||| | |||||| |||||| | ||||||||||||||||||||||| | ||||||||||||    
T  51479517 acaaggtatgcaaaatcttttccgtttgcattttgtgcatctgacaaccctgcccttgtcatttctctgacattgatggca 51479437  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 399 - 460
Target Start/End: Complemental strand, 51454923 - 51454862
Alignment:
Q  399 taaggacccatcttcgatcccctattgattgagaaacagtaacagaaccacaattacataca 460  Q
    |||||| || ||||| |||| || |||||||| |||||||||||||||||||||||||||||    
T  51454923 taaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacataca 51454862  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 409 - 461
Target Start/End: Complemental strand, 51496401 - 51496349
Alignment:
Q  409 tcttcgatcccctattgattgagaaacagtaacagaaccacaattacatacaa 461  Q
    |||||||||| || |||||||||||||| |||||||| |||||||||||||||    
T  51496401 tcttcgatccactgttgattgagaaacattaacagaatcacaattacatacaa 51496349  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 299 - 374
Target Start/End: Complemental strand, 51496490 - 51496415
Alignment:
Q  299 gtatgcaaaatttcttccggtcgcatttcgtgcatttcacaaccctgcccttgtcatttcttttacattgatggca 374  Q
    |||||||| || | ||||| | |||||| |||||| | ||||||||||||||||||||||| | ||||||||||||    
T  51496490 gtatgcaatatcttttccgtttgcattttgtgcatctaacaaccctgcccttgtcatttctctgacattgatggca 51496415  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 26661619 - 26661567
Alignment:
Q  94 tgagaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtc 146  Q
    ||||||||||| |||||||| ||| |||||||||||||| | |||||||||||    
T  26661619 tgagaggacccataaactcattgccttaaggttttgggtaagagtgtggtgtc 26661567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 371
Target Start/End: Complemental strand, 51455062 - 51454930
Alignment:
Q  235 gaagcacgttaaacagaataaaacataagttaaggaagttgtacgtaccaacggttaatacaaagtatgcaaaatttcttccggtcgcatttcgtgcatt 334  Q
    |||||| |||||||| | ||||||| ||||||||||||||||||    |||  ||| | |||| |||||||| || |  |||| | |||||| ||||||     
T  51455062 gaagcaagttaaacaaagtaaaacagaagttaaggaagttgtac----caattgtttaaacaaggtatgcaatatcttctccgtttgcattttgtgcatc 51454967  T
Q  335 tcacaaccctgcccttgtcatttcttttacattgatg 371  Q
    | |||||||||||||| || ||||| | |||||||||    
T  51454966 tgacaaccctgcccttatcgtttctctgacattgatg 51454930  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 41157054 - 41157104
Alignment:
Q  96 agaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtc 146  Q
    ||||||||| |||||||| ||| |||||||||||||| | |||||||||||    
T  41157054 agaggacccataaactcattgctttaaggttttgggtaagagtgtggtgtc 41157104  T

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Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 11442914 - 11443002
Alignment:
Q  94 tgagaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtccaaactcacttgtctggttgctctgagcccaatgtg 182  Q
    ||||||||||| |||||||||||| |||||||||||||| ||  |||||||||||| ||||||||| |||||||||| |||||||||||    
T  11442914 tgagaggacccataaactcaatgccttaaggttttgggtgaatatgtggtgtccaatctcacttgtgtggttgctcttagcccaatgtg 11443002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 40991814 - 40991905
Alignment:
Q  94 tgagaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtccaaactcacttgtctggttgctctgagcccaatgtggatg 186  Q
    ||||||||||| ||||| |||||| | |||||||||||||||  |||||||||| ||||||| ||| ||||||||||  ||||||||||||||    
T  40991814 tgagaggacccataaacccaatgcctcaaggttttgggttaagatgtggtgtcc-aactcacctgtgtggttgctctaggcccaatgtggatg 40991905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 186
Target Start/End: Complemental strand, 30737718 - 30737624
Alignment:
Q  91 aaatgagaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtccaaactcacttgtctggttgctctgagcccaatgtggatg 186  Q
    |||||||||||||| ||||| |||||   |||||||||||||||||||| ||||||| |||||| |||| |||||||||| | |||||||| ||||    
T  30737718 aaatgagaggacccataaacccaatgtcataaggttttgggttaaagtgcggtgtcc-aactcaattgtatggttgctctaatcccaatgtagatg 30737624  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 5915930 - 5915980
Alignment:
Q  96 agaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtc 146  Q
    ||||||||| |||||||| ||| |||||||||||||| | |||||||||||    
T  5915930 agaggacccataaactcattgccttaaggttttgggtaagagtgtggtgtc 5915980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 94 - 191
Target Start/End: Original strand, 2336685 - 2336781
Alignment:
Q  94 tgagaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtccaaactcacttgtctggttgctctgagcccaatgtggatggtcac 191  Q
    ||||||||||| |||| ||||||| ||||| |||||||||||  |||||||||| ||||||||||| |||||||||||| |||||||| |||| ||||    
T  2336685 tgagaggacccataaattcaatgccttaagattttgggttaagatgtggtgtcc-aactcacttgtgtggttgctctgaacccaatgtcgatgatcac 2336781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 2803262 - 2803175
Alignment:
Q  95 gagaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtccaaactcacttgtctggttgctctgagcccaatgtgg 183  Q
    |||| ||||| |||||| ||||  |||| ||||||||| |||||||| ||||||| ||||||||||| || |||||| ||| |||||||    
T  2803262 gagatgacccataaacttaatgtcttaacgttttgggtaaaagtgtgatgtccaa-ctcacttgtcttgtggctctgggccaaatgtgg 2803175  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 39693927 - 39693990
Alignment:
Q  106 taaactcaatgcattaaggttttgggttaaagtgtggtgtccaaactcacttgtctggttgctctga 172  Q
    |||||||||||| ||||| |||||||||||  |||||||||| ||||||||||  ||||||||||||    
T  39693927 taaactcaatgccttaagattttgggttaagatgtggtgtcc-aactcacttg--tggttgctctga 39693990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 28254332 - 28254282
Alignment:
Q  96 agaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtc 146  Q
    ||||||||| |||||||| ||| |||||||||||||| | |||||||||||    
T  28254332 agaggacccataaactcattgccttaaggttttgggtaagagtgtggtgtc 28254282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 36005975 - 36005929
Alignment:
Q  96 agaggacccttaaactcaatgcattaaggttttgggttaaagtgtgg 142  Q
    ||||||||| |||||||| ||| |||||||||||||| |||||||||    
T  36005975 agaggacccataaactcattgccttaaggttttgggtaaaagtgtgg 36005929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 29802602 - 29802693
Alignment:
Q  94 tgagaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtccaaactcacttgtctggttgctctgagcccaatgtggatg 186  Q
    ||||||||||| ||||| |||||| ||||||||||| |||||  | |||||||| ||||||||||| ||||||||||  ||||||||||||||    
T  29802602 tgagaggacccataaacccaatgccttaaggttttgtgttaagatatggtgtcc-aactcacttgtgtggttgctcttggcccaatgtggatg 29802693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 53667408 - 53667335
Alignment:
Q  112 caatgcattaaggttttgggttaaagtgtggtgtccaaactcacttgtctggttgctctgagcccaatgtggatg 186  Q
    ||||||||||||||||| |||| ||||||||||| | ||||||||||  | ||||||||||||||||||||||||    
T  53667408 caatgcattaaggttttaggttgaagtgtggtgt-ctaactcacttgcgttgttgctctgagcccaatgtggatg 53667335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 30249789 - 30249854
Alignment:
Q  119 ttaaggttttgggttaaagtgtggtgtccaaactcacttgtctggttgctctgagcccaatgtggat 185  Q
    ||||||||||||||||||| ||| |||||||| |||||||| |||||||||| || | |||||||||    
T  30249789 ttaaggttttgggttaaagagtgatgtccaaa-tcacttgtgtggttgctcttagtctaatgtggat 30249854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 36629300 - 36629350
Alignment:
Q  96 agaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtc 146  Q
    ||||||||| |||||||| ||| |||||||||||||| | |||||||||||    
T  36629300 agaggacccataaactcattgccttaaggttttgggtaagagtgtggtgtc 36629350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 2041142 - 2041222
Alignment:
Q  94 tgagaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtccaaactcacttgtctggttgctctgagcc 175  Q
    ||||| ||||| ||||  || ||| |||||||||||||| ||  |||||||||| ||||||||||| |||||||||| ||||    
T  2041142 tgagatgacccgtaaatccattgccttaaggttttgggtgaagatgtggtgtcc-aactcacttgtgtggttgctcttagcc 2041222  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 31957580 - 31957636
Alignment:
Q  113 aatgcattaaggttttgggttaaagtgtggtgtccaaactcacttgtctggttgctct 170  Q
    ||||| |||||||||||||||||  |||||||||| ||||||||||  ||||||||||    
T  31957580 aatgccttaaggttttgggttaagatgtggtgtcc-aactcacttgcgtggttgctct 31957636  T

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Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 652 - 723
Target Start/End: Original strand, 410994 - 411065
Alignment:
Q  652 tcttcttaacttccagctcctcctctacatctgacaagtaatcctcgttcaatgatctgctactcttcttgg 723  Q
    ||||||| |||||||  |||||||| |||||||||| |||||| || ||||||||||| |||||||||||||    
T  410994 tcttcttcacttccacttcctcctccacatctgacatgtaatcatccttcaatgatctactactcttcttgg 411065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 479 - 537
Target Start/End: Original strand, 422487 - 422545
Alignment:
Q  479 aattcaaacatatatctacaacatgaaataaaaattaacaaaaagatcatatgatgtta 537  Q
    |||||||||||||||||||||  |||||| ||||||| |||||||||||| ||||||||    
T  422487 aattcaaacatatatctacaaagtgaaattaaaattagcaaaaagatcatgtgatgtta 422545  T

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Target: scaffold0002; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 460 - 530
Target Start/End: Original strand, 426477 - 426547
Alignment:
Q  460 aatacaacatgtaactcaaaattcaaacatatatctacaacatgaaataaaaattaacaaaaagatcatat 530  Q
    ||||||||||||||||| ||  ||||||| ||||||||||  |||||| ||||||| |||||| |||||||    
T  426477 aatacaacatgtaactccaagctcaaacacatatctacaaagtgaaattaaaattagcaaaaatatcatat 426547  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 182
Target Start/End: Complemental strand, 50329428 - 50329342
Alignment:
Q  95 gagaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtccaaactcacttgtctggttgctctgagcccaatgtg 182  Q
    |||||||||| ||||  |||||| |||||||||||||||||   ||||||| ||||||||||||| |||||||||| || ||||||||    
T  50329428 gagaggacccataaatccaatgccttaaggttttgggttaagacgtggtgt-caaactcacttgtttggttgctcttagaccaatgtg 50329342  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 32445946 - 32445998
Alignment:
Q  94 tgagaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtc 146  Q
    ||||||||||| ||||| ||| || ||||||||||||||||||||||||||||    
T  32445946 tgagaggacccataaacccaacgccttaaggttttgggttaaagtgtggtgtc 32445998  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 4124185 - 4124133
Alignment:
Q  94 tgagaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtc 146  Q
    ||||||||||  |||||||| |||||||||||||||| | |||||||||||||    
T  4124185 tgagaggaccaataaactcattgcattaaggttttggataaaagtgtggtgtc 4124133  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 37533105 - 37533056
Alignment:
Q  96 agaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtc 146  Q
    ||||||||| |||||||| ||| ||||||||||||| ||||||||||||||    
T  37533105 agaggacccataaactcattgccttaaggttttggg-taaagtgtggtgtc 37533056  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 3409322 - 3409372
Alignment:
Q  96 agaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtc 146  Q
    ||||||||| |||||||| ||| |||||||||||||| | |||||||||||    
T  3409322 agaggacccataaactcattgccttaaggttttgggtaagagtgtggtgtc 3409372  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 10074086 - 10074036
Alignment:
Q  96 agaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtc 146  Q
    ||||||||| ||||| || ||| |||||||||||||| |||||||||||||    
T  10074086 agaggacccataaacccattgccttaaggttttgggtaaaagtgtggtgtc 10074036  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 10074458 - 10074408
Alignment:
Q  96 agaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtc 146  Q
    ||||||||| |||||||| ||| |||||||||||||| | |||||||||||    
T  10074458 agaggacccataaactcattgccttaaggttttgggtaagagtgtggtgtc 10074408  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 2344980 - 2345025
Alignment:
Q  106 taaactcaatgcattaaggttttgggttaaagtgtggtgtccaaac 151  Q
    |||||||||||| |||| ||||||| ||||||||| ||||||||||    
T  2344980 taaactcaatgctttaaagttttggattaaagtgttgtgtccaaac 2345025  T

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