View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_20 (Length: 412)
Name: NF20919_low_20
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 31458409 - 31458004
Alignment:
| Q |
1 |
aaggtggaaatatcaccaatttctgagggaattggaccactaagtctatttcccaaaagtgacctgaaaaatagaaataattggaagttgagacttgaga |
100 |
Q |
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| T |
31458409 |
aaggtggaaatatcaccaatttctgagggaattggaccactaagtctatttcccaaaagtgacctgaaaaatagaaataattggaagttgagacttgaga |
31458310 |
T |
|
| Q |
101 |
aattgnnnnnnnn-tgtgtgcatgtaaaagcatgcaaactaattaggaaaaattttatacagaatttttgaagaccatatgcctcatacatacatagcat |
199 |
Q |
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| T |
31458309 |
aattgaaaaaaaaatgtgtgcatgtaaaagcatgcaaactaattaggaaaaaatttatacagaatttttgaagaccatatgcctcatacatacatagcat |
31458210 |
T |
|
| Q |
200 |
aaagtaagaaaataaaacacataaatatataca--aaggtaacatggcttacagtgtcacaagtgatgagagccctccaagattctttggaattgagcca |
297 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31458209 |
aaagtaagaaaataaaacacataaatatatacacaaaggtaacatggcttacagtgtcacaagtgatgagagccctccaagactctttggaattgagcca |
31458110 |
T |
|
| Q |
298 |
tttatataattcctagtgagatcactgctcagtataaaatatcaattagattcttttaaaaataataattataattaatgtcatattcttttgaatttga |
397 |
Q |
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| T |
31458109 |
tttatataattcctagtgagatcactgctcagtataaaatatcaattagattctttttaaaataataatgataattaatgtcatattcttttgaatttga |
31458010 |
T |
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| Q |
398 |
tgatgt |
403 |
Q |
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|||||| |
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| T |
31458009 |
tgatgt |
31458004 |
T |
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Back To:
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 20057708 - 20057647
Alignment:
| Q |
7 |
gaaatatcaccaatttctgagggaattggaccactaagtctatttcccaaaagtgacctgaa |
68 |
Q |
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||||||||||||||||||| ||||||||||||||| | || ||||||||||| |||||||| |
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| T |
20057708 |
gaaatatcaccaatttctgtgggaattggaccacttaatcggtttcccaaaagcgacctgaa |
20057647 |
T |
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