View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_22 (Length: 401)
Name: NF20919_low_22
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_22 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 26684755 - 26684371
Alignment:
| Q |
18 |
agttccaccatttctttcaaaaacatttgatttggttgatgacccttcattgaatccaatcatatcatggagttccaatggtggtagctttgttgtttgg |
117 |
Q |
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| T |
26684755 |
agttccaccatttctttcaaaaacatttgatttggttgatgacccttcattgaatccaatcatatcatggagttccaatggtggtagctttgttgtttgg |
26684656 |
T |
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| Q |
118 |
gatcctttggagtttgcaagaattatcttacctagacacttcaaacacaacaatttctccagttttgttcgtcagcttaatacttatgtgggtatttttg |
217 |
Q |
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| T |
26684655 |
gatcctttggagtttgcaagaattatcttgcctagacacttcaaacacaacaatttctccagttttgttcgtcagcttaatacttatgtgggtatttttg |
26684556 |
T |
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| Q |
218 |
gtttttgtattcttttgctacttttcacaataatcacaatgcctctaatggcccctatttatctttgtaatgtaactaacta-nnnnnnnnnnnnnnnnn |
316 |
Q |
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| T |
26684555 |
gtttttgtattcttttgctacttttcacaataatcacaatgcctctaatggcccctatttatctttgtaatgtaactaactatttttctttttttttgtt |
26684456 |
T |
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| Q |
317 |
nngtaactaactatttaattccctcttccccccttgtgtttgttgattgaacaatttggtgtatcaattgggaatgtaaataatt |
401 |
Q |
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| T |
26684455 |
ttgtaactaactatttaattccctcttccccccttgtgtttgttgattgaacaatttggtgtatcaattgggaatgtaaataatt |
26684371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 6385777 - 6385820
Alignment:
| Q |
163 |
cacaacaatttctccagttttgttcgtcagcttaatacttatgt |
206 |
Q |
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| T |
6385777 |
cacaacaatttctctagctttgttcgtcagcttaatacttatgt |
6385820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 2910898 - 2910947
Alignment:
| Q |
157 |
ttcaaacacaacaatttctccagttttgttcgtcagcttaatacttatgt |
206 |
Q |
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| T |
2910898 |
ttcaaacacaataatttctccagtttcgttcgtcaactcaatacctatgt |
2910947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 9897 - 9946
Alignment:
| Q |
157 |
ttcaaacacaacaatttctccagttttgttcgtcagcttaatacttatgt |
206 |
Q |
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| T |
9897 |
ttcaaacacaataatttctccagctttgttcgtcaactcaatacttatgt |
9946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 38334620 - 38334658
Alignment:
| Q |
148 |
cctagacacttcaaacacaacaatttctccagttttgtt |
186 |
Q |
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| T |
38334620 |
cctagatacttcaaacacaacaatttctcaagttttgtt |
38334658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 32734717 - 32734767
Alignment:
| Q |
156 |
cttcaaacacaacaatttctccagttttgttcgtcagcttaatacttatgt |
206 |
Q |
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| T |
32734717 |
cttcaaacacaacaatttctctagctttgttcgtcaactcaacacttatgt |
32734767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 14865995 - 14865946
Alignment:
| Q |
157 |
ttcaaacacaacaatttctccagttttgttcgtcagcttaatacttatgt |
206 |
Q |
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| T |
14865995 |
ttcaaacacaacaatttctccagcttcattcgtcagctcaatacatatgt |
14865946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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