View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_23 (Length: 400)
Name: NF20919_low_23
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 29253867 - 29253484
Alignment:
| Q |
1 |
cataaaatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaagacattcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29253867 |
cataaaatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaagacattcaat |
29253768 |
T |
|
| Q |
101 |
caatagccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatacactccaggtgttaattttaggtacattgttgttgggaatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29253767 |
caatagccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatacactccaggtgttaattttaggtacattgttgttgggaatga |
29253668 |
T |
|
| Q |
201 |
aataaatcccagtaatgacccaacatcacaatttgttcttcgtgcaatgcagaacatttattcagcacttgcatctgccaacttgcaaaatcaaattaag |
300 |
Q |
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| T |
29253667 |
aataaatcctagtaatgacccaacatcacaatttgttcttcgtgcaatgcagaatatttattcagcacttgcatctgccaacttgcaaaatcaaattaag |
29253568 |
T |
|
| Q |
301 |
atttcaacagctataaatatgggtttgttgggaagctcgtatcctccatcagcaggagcatttagtgcttccgcaattccatat |
384 |
Q |
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| T |
29253567 |
atttcaacagctataaatatgggtttgttgggaagctcgtatcctccatcagcaggagcatttagtgcttccgcaattccatat |
29253484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 6 - 384
Target Start/End: Original strand, 29288033 - 29288411
Alignment:
| Q |
6 |
aatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaagacattcaatcaata |
105 |
Q |
| |
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||||||||||||| |||||||||||||||| || || || |||||| ||| || ||||| |||||||||| ||||||||||||||||||||| |
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| T |
29288033 |
aatgagaatatatgatcctgatcaagcaaccttagaggctctaagaggctctaatatagaacttgttattggggtccgtaatgaagacattcaatcaatt |
29288132 |
T |
|
| Q |
106 |
gccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatacactccaggtgttaattttaggtacattgttgttgggaatgaaataa |
205 |
Q |
| |
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||| | | |||||||||| | |||||||||||||||||| |||||||||||| ||| || || || ||||||||||||||||||||||||||||||| |
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| T |
29288133 |
gcctatagtgtttcatcagctactaattgggtccaaaacaacatactaaaatactctcaagacgtaaagtttaggtacattgttgttgggaatgaaataa |
29288232 |
T |
|
| Q |
206 |
atcccagtaatgacccaacatcacaatttgttcttcgtgcaatgcagaacatttattcagcacttgcatctgccaacttgcaaaatcaaattaagatttc |
305 |
Q |
| |
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|||| |||||||| |||||||| |||||||||| | ||||||||||||||||||| ||||||| |||||| |||| | ||||||||||||||| |||| |
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| T |
29288233 |
atcctagtaatgatgcaacatcaaaatttgttctacttgcaatgcagaacatttatacagcactagcatcttccaatctacaaaatcaaattaaggtttc |
29288332 |
T |
|
| Q |
306 |
aacagctataaatatgggtttgttgggaagctcgtatcctccatcagcaggagcatttagtgcttccgcaattccatat |
384 |
Q |
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| T |
29288333 |
aacagctatacaaatgaatttgttaggaagttcatatcctccatcacaaggagtatttagtccttcttcaatttcatat |
29288411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 29440719 - 29440636
Alignment:
| Q |
18 |
taatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaagacattcaatc |
101 |
Q |
| |
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|||||||||||||||||| ||| | |||| | |||| || ||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
29440719 |
taatcctgatcaagcaaccttgaatgccttacgagggactaatttatctcttatcattggggtctctaatgaagacattcaatc |
29440636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 29444366 - 29444283
Alignment:
| Q |
18 |
taatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaagacattcaatc |
101 |
Q |
| |
|
|||||||||||||||||| ||| | |||| | |||| || ||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
29444366 |
taatcctgatcaagcaaccttgaatgccttacgagggactaatttatctcttatcattggggtctctaatgaagacattcaatc |
29444283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 13431577 - 13431643
Alignment:
| Q |
67 |
cttgtcattggggtccctaatgaagacattcaatcaatagccaacgatatttcatcagcaaataatt |
133 |
Q |
| |
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||||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||| ||||| |
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| T |
13431577 |
cttgtcattggagtccctaatgaagacatcaaatcaattgccaatagtatttcatcagcaactaatt |
13431643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 13303393 - 13303327
Alignment:
| Q |
67 |
cttgtcattggggtccctaatgaagacattcaatcaatagccaacgatatttcatcagcaaataatt |
133 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| ||||| | |||||||||||| ||||| |
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| T |
13303393 |
cttgtcattggagtccctaatgaagacatcaaatcaattgccaatagtttttcatcagcaactaatt |
13303327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 6 - 365
Target Start/End: Complemental strand, 21287462 - 21287103
Alignment:
| Q |
6 |
aatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaagacattcaatcaata |
105 |
Q |
| |
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||||||||| ||| |||||||||||||||| || ||||| |||||| ||| | || ||||||||||| || ||||||||| ||||| ||||||| |
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| T |
21287462 |
aatgagaatttatgatcctgatcaagcaacattagaagctctaagaggttctaacatagaacttgtcattggagttcctaatgaaaacattgaatcaatt |
21287363 |
T |
|
| Q |
106 |
gccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatacactccagg-tgttaattttaggtacattgttgttgggaatgaaata |
204 |
Q |
| |
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|| || | |||||||||| | | |||||||||||||||||||| |||| ||| | | ||| ||| || ||||| |||||||||||||||||||||||| |
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| T |
21287362 |
gctaatagtgtttcatcagctacttattgggtccaaaacaatatattaaattactc-caaggatgtcaaatttagatacattgttgttgggaatgaaata |
21287264 |
T |
|
| Q |
205 |
aatcccagtaatgacccaacatcacaatttgttcttcgtgcaatgcagaacatttattcagcacttgcatctgccaacttgcaaaatcaaattaagattt |
304 |
Q |
| |
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|||| |||||||| ||||||||| ||||||||| | |||||| ||||||| || ||||||| |||||||||| || || ||||||| ||| ||| |
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| T |
21287263 |
gatcctagtaatgatccaacatcaacatttgttctaccagcaatgttgaacattaatgcagcactcacatctgccaatttacagcatcaaatcaaggttt |
21287164 |
T |
|
| Q |
305 |
caacagctataaatatgggtttgttgggaagctcgtatcctccatcagcaggagcatttag |
365 |
Q |
| |
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|||| |||||| | ||| |||||||||||| || |||||||||||| |||| |||||||| |
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|
| T |
21287163 |
caactgctatacaaatgaatttgttgggaagttcctatcctccatcatcaggtgcatttag |
21287103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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