View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_24 (Length: 399)
Name: NF20919_low_24
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 12065116 - 12065491
Alignment:
| Q |
19 |
tctagtacccatcttgatttctagctttcttccatttttccctgttataggatttcttgtgcaatccttcaaagatattcttcaatctagagtcaaaaag |
118 |
Q |
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| T |
12065116 |
tctagtacccatcttgatttctagctttcttccatttttccctgttataggatttcttgtgcaatccttcaaagagattcttcaatctagagtcaaaaag |
12065215 |
T |
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| Q |
119 |
ccccatcactctatgtcttaaaaaaggttaatacatgccgaccagaaaatatatttcagcaaaagtataatgtgagtgatcattgcaactatggcaaatg |
218 |
Q |
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| T |
12065216 |
ccccatcactctatgtcttaaaaaaggttaatacatgccgaccggaaaatatatttcagcaaaagtataatgtgagtgatcattgcaactatggcaaatg |
12065315 |
T |
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| Q |
219 |
aataatgtaactgctctctctttctactagcccgtaaacttgatatgtataacaaccttgtgtttcatactttttcataattaaatatatatgactctct |
318 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12065316 |
aataatgtaactactctctctttctactagcccgtaaacttgatatgtataacaaccttgtgtttcatactttttcataattaaatatatatgactctct |
12065415 |
T |
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| Q |
319 |
ctttctcatgttataaagtttatcttttatgaaattgggttagtagcagcgctctttctcttatattcatctcact |
394 |
Q |
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| T |
12065416 |
ctttctcatgttataaagtttatcttttatgaaattgggttagtagcagtgctctttctcttatattcatttcact |
12065491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 12101862 - 12101799
Alignment:
| Q |
161 |
cagaaaatatatttcagcaaaagtataatgtgagtgatcattgcaactatggcaaatgaataatgt |
226 |
Q |
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| T |
12101862 |
cagaaaaaatatttcagcaaaagta--atgtgagtgatcattgacactatggcaagtgaataatgt |
12101799 |
T |
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