View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20919_low_25 (Length: 385)
Name: NF20919_low_25
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_25 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 372
Target Start/End: Complemental strand, 31041554 - 31041195
Alignment:
| Q |
11 |
cataggttcatcaagtttaacaagaaaattaacctaagaatagattttcaatttcattgtcttacatcaacaagaagcacatttcgttgatgaacctatg |
110 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31041554 |
cataggttcatcaggtttaacaagaaaattaacctaagaatagattttcaatttcattgtcttacatcaacaagaagcgcatttcgttgatgaacctatg |
31041455 |
T |
|
| Q |
111 |
tgctaagttccaacttgcttgtcataggttcatcaaatttcaaagcacatttcatttcggagtctaagttaacaacaatttgatgtttagatcttgtttc |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31041454 |
tgctc--ttccaacttgcttgtcataggttcatcaaatttcaaagcacatttcatttcggagtctaagttaacaacaatttgatgtttagatcttgtttc |
31041357 |
T |
|
| Q |
211 |
tcctaggaaggttcccattgttacgcccacagtcatagcacacctatgtactattttaaagtagattgtactattgtttgtgtcacaagaannnnnnnat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31041356 |
tcctaggaaggttcccattgttacgcccacagtcatagcacacctatgtactattttaaagtagattgtactattgtttgtgtcacaagaatttttttat |
31041257 |
T |
|
| Q |
311 |
atataaataactatatattaaggattataaccaatcacaaggggtgaaggtatgtattaagt |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31041256 |
atataaataactatatattaaggattataaccaatcacaaggggtgaaggtatgtattaagt |
31041195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 31067412 - 31067240
Alignment:
| Q |
79 |
aacaagaagcacatttcgttgatgaacctatgtgctaagttccaacttgcttgtcataggttcatcaaatttcaaagcacatttcatttcggagtctaag |
178 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
31067412 |
aacaagaagtacattttattgatgaacctatgcgctc--ttccaatttgcttgtcataggttcctcaaatttcaaagcacatttcatttcagagtcaaag |
31067315 |
T |
|
| Q |
179 |
ttaacaacaatttgatgtttagatcttgtttctcctaggaaggttcccattgttacgcccacagtcatagcacacc |
254 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
31067314 |
ttaacaacaatttcatgtttagatcttgtttctcctaggaaggttcccattgttacg-ccacagtcatagcgcacc |
31067240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 31098525 - 31098644
Alignment:
| Q |
135 |
taggttcatcaaatttcaaagcacatttcatttcggagtctaa-gttaacaacaatttgatgtttagatcttgtttctcctaggaaggttcccattgtta |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
31098525 |
taggttcatcaaatttcaaagcacatttcatttcagagtcaaaagttaacaacaatttcatgtttagatcttgtttctcctaggaagatttccattgtta |
31098624 |
T |
|
| Q |
234 |
cgcccacagtcatagcacacc |
254 |
Q |
| |
|
|| ||||| ||||||| |||| |
|
|
| T |
31098625 |
cg-ccacattcatagcgcacc |
31098644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University