View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_26 (Length: 379)
Name: NF20919_low_26
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 6 - 330
Target Start/End: Complemental strand, 38111023 - 38110699
Alignment:
| Q |
6 |
gtagcaaaggccaaagtgtgttannnnnnnngaaaatttgttcccgttattccacgatatttttacatcatagttggaattttcgtttaataatatttgc |
105 |
Q |
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| T |
38111023 |
gtagcaatggccaaagtgtgttattttttttgaaaatttgttcccgttattccacgatatttttacatcatagttggaattttcgtttaataatatttgc |
38110924 |
T |
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| Q |
106 |
atatgtatgtagggattagattttgtgatatcagagtcnnnnnnntacggagtgcaacttatacttggcttggtgaataattggaatgctttgggaggaa |
205 |
Q |
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| T |
38110923 |
atatgtatgtagggattagattttgtgatatcagagtcaaaaaaatacggagtgcaacttatacttggcttggtgaataattggaatgctttgggaggaa |
38110824 |
T |
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| Q |
206 |
aacataaatatgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacacatcccgttgttaagcaatactacaaaaacca |
305 |
Q |
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| T |
38110823 |
aacataaatatgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacacatcccgttgttaagcaatactacaaaaacca |
38110724 |
T |
|
| Q |
306 |
tgttaaggtaaggtatcatatcata |
330 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
38110723 |
tgttaaggtaaggtatcatatcata |
38110699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 115 - 315
Target Start/End: Complemental strand, 38085815 - 38085615
Alignment:
| Q |
115 |
tagggattagattttgtgatatcagagtcnnnnnnntacggagtgcaacttatacttggcttggtgaataattggaatgctttgggaggaaaacataaat |
214 |
Q |
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| T |
38085815 |
taggcattggattttgtgatatcagaggcaagcaaatatggagtgaaacttatacttagcttggtgaataattggaatgattttggaggcaagaacaaat |
38085716 |
T |
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| Q |
215 |
atgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacacatcccgttgttaagcaatactacaaaaaccatgttaaggt |
314 |
Q |
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| T |
38085715 |
atgtgcagtgggcaaaagaacgtggtcaaaatatcaaaaacgatgatgacttctttacacaccccgttgttaagcaatactacaaaaatcatgttaaggt |
38085616 |
T |
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| Q |
315 |
a |
315 |
Q |
| |
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| T |
38085615 |
a |
38085615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 97 - 315
Target Start/End: Complemental strand, 38142498 - 38142280
Alignment:
| Q |
97 |
aatatttgcatatgtatgtagggattagattttgtgatatcagagtcnnnnnnntacggagtgcaacttatacttggcttggtgaataattggaatgctt |
196 |
Q |
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| T |
38142498 |
aatatttgcatgtgtacgtagggattggattttgtgatatcagaggcaaacaaatatggagtgaaacttatactgagcttagtgaataattggaatgatt |
38142399 |
T |
|
| Q |
197 |
tgggaggaaaacataaatatgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacacatcccgttgttaagcaatacta |
296 |
Q |
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| T |
38142398 |
ttggaggcaaaaagaaatatgtgcagtgggcaagagaacgtggtcaaaatgtcaaaattgaagatgacttctttattaatcctcttgttaagcaatacta |
38142299 |
T |
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| Q |
297 |
caaaaaccatgttaaggta |
315 |
Q |
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||||||| ||||||||||| |
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| T |
38142298 |
caaaaacaatgttaaggta |
38142280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 97 - 315
Target Start/End: Complemental strand, 38155844 - 38155626
Alignment:
| Q |
97 |
aatatttgcatatgtatgtagggattagattttgtgatatcagagtcnnnnnnntacggagtgcaacttatacttggcttggtgaataattggaatgctt |
196 |
Q |
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| T |
38155844 |
aatacttgcatgtgtatgtagggtttggattttgtgatatcagaggcaagaaaatatggagtgaaacttatactgagcttagtgaataattggaatgatt |
38155745 |
T |
|
| Q |
197 |
tgggaggaaaacataaatatgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacacatcccgttgttaagcaatacta |
296 |
Q |
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| T |
38155744 |
ttggaggcaaaaagaaatatgtgcagtgggcaagagaacgtggtcaaaatgtcaaaattgaagatgacttctttattaaccctcttgttaagcaatacta |
38155645 |
T |
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| Q |
297 |
caaaaaccatgttaaggta |
315 |
Q |
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||||||| ||||||||||| |
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| T |
38155644 |
caaaaacaatgttaaggta |
38155626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 311
Target Start/End: Complemental strand, 38090802 - 38090602
Alignment:
| Q |
111 |
tatgtagggattagattttgtgatatcagagtcnnnnnnntacggagtgcaacttatacttggcttggtgaataattggaatgctttgggaggaaaacat |
210 |
Q |
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|||| |||||||||||||||||||||||||| | || |||||| || | ||||| |||| | |||||||||||| ||| ||||| ||| | |
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| T |
38090802 |
tatgcagggattagattttgtgatatcagaggcaagcaaatatggagtgaaattgatactaagcttagccaataattggaataattttggaggcaaaaac |
38090703 |
T |
|
| Q |
211 |
aaatatgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacacatcccgttgttaagcaatactacaaaaaccatgtta |
310 |
Q |
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| T |
38090702 |
aaatatgttcaatgggcaagagaacacggtcataacataaaaaatgacgacgacttctttacacaccctcttgttaagcaatactacaaaaatcatgtta |
38090603 |
T |
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| Q |
311 |
a |
311 |
Q |
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| T |
38090602 |
a |
38090602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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