View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20919_low_27 (Length: 378)

Name: NF20919_low_27
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20919_low_27
NF20919_low_27
[»] chr4 (25 HSPs)
chr4 (5-340)||(9561118-9561455)
chr4 (1-163)||(34986296-34986458)
chr4 (1-165)||(2847960-2848123)
chr4 (1-163)||(20588094-20588256)
chr4 (49-161)||(9561024-9561136)
chr4 (92-174)||(810233-810315)
chr4 (84-165)||(9561582-9561663)
chr4 (84-161)||(55780302-55780379)
chr4 (84-161)||(55844482-55844559)
chr4 (85-170)||(20588040-20588124)
chr4 (85-161)||(2847906-2847982)
chr4 (87-122)||(808744-808779)
chr4 (87-122)||(809115-809150)
chr4 (87-122)||(809486-809521)
chr4 (87-122)||(809656-809691)
chr4 (87-122)||(810027-810062)
chr4 (87-122)||(54754360-54754395)
chr4 (87-122)||(808945-808980)
chr4 (87-122)||(809316-809351)
chr4 (87-122)||(54756725-54756760)
chr4 (87-122)||(54756926-54756961)
chr4 (87-122)||(54757529-54757564)
chr4 (87-122)||(54757730-54757765)
chr4 (131-165)||(54756341-54756375)
chr4 (96-160)||(1701131-1701195)
[»] chr6 (17 HSPs)
chr6 (5-340)||(18762698-18763036)
chr6 (1-163)||(7851393-7851552)
chr6 (45-161)||(18762600-18762716)
chr6 (1-161)||(32556400-32556562)
chr6 (45-161)||(18762491-18762607)
chr6 (84-158)||(28123068-28123142)
chr6 (90-166)||(32556535-32556611)
chr6 (91-165)||(28122930-28123004)
chr6 (85-161)||(18762422-18762498)
chr6 (87-122)||(22038107-22038142)
chr6 (11-50)||(28123278-28123317)
chr6 (87-161)||(28123305-28123379)
chr6 (87-161)||(28123504-28123578)
chr6 (88-161)||(7851530-7851603)
chr6 (87-162)||(15034003-15034078)
chr6 (92-122)||(22038313-22038343)
chr6 (131-165)||(22038653-22038687)
[»] scaffold0065 (5 HSPs)
scaffold0065 (17-340)||(229-557)
scaffold0065 (1-161)||(551-703)
scaffold0065 (45-161)||(681-797)
scaffold0065 (84-165)||(21-102)
scaffold0065 (85-161)||(790-865)
[»] chr7 (21 HSPs)
chr7 (45-340)||(10563975-10564273)
chr7 (45-266)||(12283179-12283402)
chr7 (1-165)||(45402720-45402884)
chr7 (1-155)||(6797235-6797389)
chr7 (1-148)||(21405881-21406027)
chr7 (45-161)||(12283395-12283511)
chr7 (45-161)||(12283504-12283620)
chr7 (82-165)||(12283079-12283162)
chr7 (71-162)||(10564457-10564548)
chr7 (71-161)||(10564266-10564356)
chr7 (71-160)||(10564554-10564643)
chr7 (85-161)||(45402666-45402742)
chr7 (84-162)||(10563830-10563908)
chr7 (71-124)||(10564399-10564452)
chr7 (85-161)||(6797182-6797257)
chr7 (85-162)||(10564648-10564725)
chr7 (87-122)||(4721019-4721054)
chr7 (87-161)||(13420428-13420502)
chr7 (87-122)||(13420629-13420664)
chr7 (11-50)||(13420691-13420730)
chr7 (11-47)||(13420490-13420526)
[»] scaffold0050 (7 HSPs)
scaffold0050 (45-340)||(16190-16487)
scaffold0050 (66-162)||(22584-22680)
scaffold0050 (56-156)||(22770-22870)
scaffold0050 (70-161)||(16106-16197)
scaffold0050 (67-121)||(22877-22931)
scaffold0050 (66-162)||(22680-22780)
scaffold0050 (84-162)||(16511-16589)
[»] scaffold0069 (2 HSPs)
scaffold0069 (1-163)||(51413-51575)
scaffold0069 (85-161)||(51553-51629)
[»] chr5 (16 HSPs)
chr5 (1-163)||(7183191-7183353)
chr5 (1-162)||(33868834-33868995)
chr5 (1-163)||(39056302-39056464)
chr5 (5-165)||(15912985-15913145)
chr5 (85-161)||(7183331-7183407)
chr5 (85-161)||(39056248-39056324)
chr5 (85-161)||(33868973-33869049)
chr5 (101-161)||(15912943-15913003)
chr5 (1-57)||(25192336-25192392)
chr5 (87-122)||(30407683-30407718)
chr5 (87-122)||(30407884-30407919)
chr5 (87-122)||(30408086-30408121)
chr5 (87-122)||(30408691-30408726)
chr5 (87-122)||(30408891-30408926)
chr5 (87-161)||(25192284-25192358)
chr5 (107-155)||(6054427-6054475)
[»] chr2 (21 HSPs)
chr2 (5-163)||(24024478-24024636)
chr2 (5-115)||(28056102-28056212)
chr2 (78-168)||(30771400-30771490)
chr2 (49-141)||(30771316-30771409)
chr2 (84-165)||(28048244-28048325)
chr2 (87-161)||(28056194-28056268)
chr2 (87-122)||(21173668-21173703)
chr2 (87-122)||(27970572-27970607)
chr2 (87-122)||(44348258-44348293)
chr2 (87-122)||(44350782-44350817)
chr2 (87-122)||(21173498-21173533)
chr2 (92-122)||(27970371-27970401)
chr2 (87-121)||(27970743-27970777)
chr2 (131-165)||(28056532-28056566)
chr2 (92-122)||(28056876-28056906)
chr2 (92-122)||(30767584-30767614)
chr2 (92-122)||(30771747-30771777)
chr2 (92-122)||(44348464-44348494)
chr2 (131-165)||(44348804-44348838)
chr2 (87-120)||(27970203-27970236)
chr2 (87-120)||(28056708-28056741)
[»] scaffold0460 (2 HSPs)
scaffold0460 (1-163)||(1658-1820)
scaffold0460 (85-161)||(1798-1874)
[»] scaffold0012 (2 HSPs)
scaffold0012 (1-163)||(119256-119418)
scaffold0012 (85-161)||(119396-119472)
[»] scaffold0006 (3 HSPs)
scaffold0006 (1-163)||(209380-209542)
scaffold0006 (85-161)||(209520-209596)
scaffold0006 (97-163)||(171559-171625)
[»] scaffold0104 (5 HSPs)
scaffold0104 (45-174)||(39205-39334)
scaffold0104 (84-165)||(39473-39554)
scaffold0104 (84-165)||(39850-39931)
scaffold0104 (87-159)||(39112-39184)
scaffold0104 (87-161)||(38883-38957)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-161)||(450258-450417)
scaffold0002 (85-161)||(450395-450471)
[»] scaffold0717 (2 HSPs)
scaffold0717 (1-163)||(7192-7354)
scaffold0717 (85-170)||(7138-7222)
[»] chr3 (12 HSPs)
chr3 (1-163)||(32233045-32233207)
chr3 (2-128)||(41568914-41569044)
chr3 (84-165)||(40219300-40219381)
chr3 (84-165)||(40219501-40219582)
chr3 (84-165)||(40219702-40219783)
chr3 (84-165)||(40219903-40219984)
chr3 (85-161)||(32233185-32233261)
chr3 (5-58)||(51452934-51452987)
chr3 (87-122)||(11974942-11974977)
chr3 (87-122)||(11975112-11975147)
chr3 (87-122)||(11975282-11975317)
chr3 (87-122)||(11975452-11975487)
[»] chr1 (18 HSPs)
chr1 (2-165)||(13590519-13590682)
chr1 (1-163)||(20372259-20372413)
chr1 (54-163)||(5077351-5077460)
chr1 (1-96)||(20481214-20481309)
chr1 (84-165)||(19845812-19845893)
chr1 (85-161)||(20372391-20372467)
chr1 (85-161)||(20481287-20481363)
chr1 (97-163)||(13673945-13674011)
chr1 (85-161)||(13590661-13590737)
chr1 (87-161)||(19846056-19846130)
chr1 (1-50)||(19846029-19846078)
chr1 (87-122)||(37223275-37223310)
chr1 (87-122)||(37223615-37223650)
chr1 (87-122)||(37223785-37223820)
chr1 (87-122)||(37223955-37223990)
chr1 (87-120)||(37223447-37223480)
chr1 (87-122)||(37224125-37224160)
chr1 (45-78)||(15992409-15992442)
[»] scaffold0019 (3 HSPs)
scaffold0019 (45-170)||(168509-168634)
scaffold0019 (84-165)||(168320-168401)
scaffold0019 (87-160)||(168654-168727)
[»] scaffold0558 (4 HSPs)
scaffold0558 (45-174)||(10627-10756)
scaffold0558 (84-165)||(10432-10513)
scaffold0558 (84-165)||(10055-10136)
scaffold0558 (87-160)||(10758-10831)
[»] chr8 (19 HSPs)
chr8 (52-163)||(44508953-44509064)
chr8 (84-165)||(17225380-17225461)
chr8 (84-165)||(40005568-40005649)
chr8 (84-165)||(40005769-40005850)
chr8 (90-165)||(40005970-40006045)
chr8 (90-162)||(40006145-40006217)
chr8 (87-122)||(17057590-17057625)
chr8 (87-122)||(17225665-17225700)
chr8 (87-122)||(17590600-17590635)
chr8 (90-122)||(40006099-40006131)
chr8 (90-162)||(40006102-40006174)
chr8 (87-122)||(17057388-17057423)
chr8 (11-50)||(17057451-17057490)
chr8 (11-50)||(17057652-17057691)
chr8 (11-50)||(17225599-17225638)
chr8 (11-50)||(17590534-17590573)
chr8 (11-50)||(17590735-17590774)
chr8 (87-122)||(17590802-17590837)
chr8 (90-118)||(17225847-17225875)
[»] scaffold0553 (1 HSPs)
scaffold0553 (84-165)||(6371-6450)
[»] scaffold0455 (7 HSPs)
scaffold0455 (84-158)||(1154-1228)
scaffold0455 (91-165)||(1016-1090)
scaffold0455 (11-50)||(1563-1602)
scaffold0455 (87-161)||(1789-1863)
scaffold0455 (11-50)||(1364-1403)
scaffold0455 (87-161)||(1391-1465)
scaffold0455 (87-161)||(1590-1664)
[»] scaffold0534 (2 HSPs)
scaffold0534 (87-122)||(5938-5973)
scaffold0534 (87-122)||(8864-8899)
[»] scaffold0144 (14 HSPs)
scaffold0144 (87-122)||(19723-19758)
scaffold0144 (87-122)||(28837-28872)
scaffold0144 (87-122)||(30983-31018)
scaffold0144 (87-122)||(33393-33428)
scaffold0144 (87-122)||(33903-33938)
scaffold0144 (87-122)||(34073-34108)
scaffold0144 (87-120)||(19385-19418)
scaffold0144 (87-120)||(34583-34616)
scaffold0144 (87-122)||(19553-19588)
scaffold0144 (87-122)||(28667-28702)
scaffold0144 (87-122)||(33563-33598)
scaffold0144 (87-122)||(34243-34278)
scaffold0144 (94-122)||(19893-19921)
scaffold0144 (90-122)||(34416-34448)
[»] scaffold0023 (4 HSPs)
scaffold0023 (87-122)||(126256-126291)
scaffold0023 (87-122)||(128579-128614)
scaffold0023 (87-122)||(126426-126461)
scaffold0023 (131-165)||(126601-126635)
[»] scaffold0581 (1 HSPs)
scaffold0581 (87-122)||(312-347)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 5 - 340
Target Start/End: Original strand, 9561118 - 9561455
Alignment:
Q  5 ataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtat 104  Q
    |||||||| ||||| |||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  9561118 ataattgtctaatgtttttaaatgaaattattattggtacatgattttaaataatgattaacatgttatacactaaaattattactgaaaccataagtat 9561217  T
Q  105 ggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaataaaacaaaagaacaaatgtgataaagatttaaactatt 204  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9561218 gatttaatggttttgataatcttcaatgtgaaaccaaaataattgtctaatggttttgtaataaaacaaaagaacaaatgtgataaagatttaaactatt 9561317  T
Q  205 attcactaattatagtacacacttataccatttaaaacaattaccgaatgtgaattaatcaatcagtgaccac--nnnnnnnnnaaacctcattatctct 302  Q
    ||||||||||||||||||||||||||| |||||||||||||||   ||| ||||||||| |||||||||||||           ||||||| | ||||||    
T  9561318 attcactaattatagtacacacttataacatttaaaacaattattaaatttgaattaataaatcagtgaccacttttttttgtaaaacctcgtcatctct 9561417  T
Q  303 cttttgtttcttccgttgtaaatcgaatttctgccttt 340  Q
    | |||||||||||||||||||| |||||||||||||||    
T  9561418 catttgtttcttccgttgtaaaacgaatttctgccttt 9561455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 34986458 - 34986296
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 100  Q
    ||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34986458 caagataattgtgtaatggtttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 34986359  T
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgt 163  Q
     ||||||||||||||||||||| |||||  || ||||||||||||||||||||||||||||||    
T  34986358 ttatggtttaatggttttgatagtcttctatgagaaaccaaaataattgtctaatggttttgt 34986296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 2847960 - 2848123
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 100  Q
    |||||||||||||||||| |||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2847960 caagataattgtgtaatgatttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 2848059  T
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
     ||| ||||||||||||||||| |||||  || ||||| ||||||||||||||||||||||||||    
T  2848060 ttat-gtttaatggttttgatagtcttctatgagaaactaaaataattgtctaatggttttgtaa 2848123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 20588094 - 20588256
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 100  Q
    |||||||||||||||||| |||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  20588094 caagataattgtgtaatgatttttaataaaattattattgttacatggttttaaataatgattaagatgttatacactgaaactattagtgaaaccataa 20588193  T
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgt 163  Q
     |||| |||||||||||||||| |||||  || ||||||||||||||| || ||| |||||||    
T  20588194 ttatgatttaatggttttgatagtcttctatgagaaaccaaaataattatcaaatagttttgt 20588256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 9561024 - 9561136
Alignment:
Q  49 ttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataatt 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||   | ||||||||||||||||    
T  9561024 ttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatgattttgatattcttgtatatgaaaccaaaataatt 9561123  T
Q  149 gtctaatggtttt 161  Q
    |||||||| ||||    
T  9561124 gtctaatgttttt 9561136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 810233 - 810315
Alignment:
Q  92 aaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaataaaacaaa 174  Q
    ||||||||||||||||||||||||||||||| | | |  |||||||||||| |||||||||||||||||||||||||||||||    
T  810233 aaaccataagtatggtttaatggttttgatagtgtcctatgtgaaaccaaactaattgtctaatggttttgtaataaaacaaa 810315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 9561582 - 9561663
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    ||||||||||||||||||||||||||||||||||||||| | |||  ||||||| ||||||||||||||||| |||||||||    
T  9561582 tattactgaaaccataagtatggtttaatggttttgatagtgttctatgtgaaatcaaaataattgtctaatagttttgtaa 9561663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 55780379 - 55780302
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    ||||||||||||||||||||||||||||||||||||||| | |||  |||||||||||| ||||||||||||||||||    
T  55780379 tattactgaaaccataagtatggtttaatggttttgatagtattctatgtgaaaccaaactaattgtctaatggtttt 55780302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 55844559 - 55844482
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    ||||||||||||||||||||||||||||||||||||||| | |||  |||||||||||| ||||||||||||||||||    
T  55844559 tattactgaaaccataagtatggtttaatggttttgatagtattctatgtgaaaccaaactaattgtctaatggtttt 55844482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 20588040 - 20588124
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaataaaa 170  Q
    |||||||||||||||||||||||||||||||||||||| ||||   ||||||||||| |||||||| ||||| |||| ||||||||    
T  20588040 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatgatttt-taataaaa 20588124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 2847906 - 2847982
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    |||||||||||||||||||||||||||||||||||||| ||||   ||||||||||| |||||||| ||||| ||||    
T  2847906 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatgatttt 2847982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 808744 - 808779
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  808744 tactgaaaccataagtatggtttaatggttttgata 808779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 809115 - 809150
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  809115 tactgaaaccataagtatggtttaatggttttgata 809150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 809486 - 809521
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  809486 tactgaaaccataagtatggtttaatggttttgata 809521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 809656 - 809691
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  809656 tactgaaaccataagtatggtttaatggttttgata 809691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 810027 - 810062
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  810027 tactgaaaccataagtatggtttaatggttttgata 810062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 54754395 - 54754360
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  54754395 tactgaaaccataagtatggtttaatggttttgata 54754360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 808945 - 808980
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    |||| |||||||||||||||||||||||||||||||    
T  808945 tactaaaaccataagtatggtttaatggttttgata 808980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 809316 - 809351
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||| ||||||||    
T  809316 tactgaaaccataagtatggtttaatgattttgata 809351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 54756760 - 54756725
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||| ||||||||||||||    
T  54756760 tactgaaaccataagtatggtataatggttttgata 54756725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 54756961 - 54756926
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||| ||||||||||||||    
T  54756961 tactgaaaccataagtatggtataatggttttgata 54756926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 54757564 - 54757529
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||| ||||||||||||||    
T  54757564 tactgaaaccataagtatggtataatggttttgata 54757529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 54757765 - 54757730
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||| ||||||||||||||    
T  54757765 tactgaaaccataagtatggtataatggttttgata 54757730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 54756375 - 54756341
Alignment:
Q  131 tgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    |||||||||||| ||||||||||||||||||||||    
T  54756375 tgtgaaaccaaactaattgtctaatggttttgtaa 54756341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 1701131 - 1701195
Alignment:
Q  96 cataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttt 160  Q
    ||||||||||||||||||||||||||| | ||   ||| |||| || |||||||| |||||||||    
T  1701131 cataagtatggtttaatggttttgatagtgttgtatgtaaaactaagataattgtgtaatggttt 1701195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 340
Target Start/End: Original strand, 18762698 - 18763036
Alignment:
Q  5 ataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtat 104  Q
    |||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18762698 ataattgtctaatggttttaaatgaaattattattggtacatgattttaaataatgattaacatgttatacactgaaattattactgaaaccataagtat 18762797  T
Q  105 ggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaataaaacaaaagaacaaatgtgataaagatttaaactatt 204  Q
    |||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||    
T  18762798 ggtttaatggttttgacagtcttcaatgtgaaaccaaaataattgtctaatggttttgtaataaaacaaaagaacaaatatgataaacatttaaaccatt 18762897  T
Q  205 attcactaattatagtacacact--tataccatttaaaacaattaccgaatgtgaattaatcaatcagtgacca-cnnnnnnnnnaaacctcattatctc 301  Q
    ||||||||| ||||||||||| |  |||| ||||||||||||||||| |||| ||||||||||||||||||||| |         ||||||||| |||||    
T  18762898 attcactaactatagtacacaatgatataacatttaaaacaattaccaaatgggaattaatcaatcagtgaccaccttttttgtaaaacctcatcatctc 18762997  T
Q  302 tcttttgtttcttccgttgtaaatcgaatttctgccttt 340  Q
    ||||||||||||||||||  ||| ||||||| |||||||    
T  18762998 tcttttgtttcttccgttacaaaacgaatttttgccttt 18763036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 7851552 - 7851393
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 100  Q
    |||||||||||||||||| |||| ||| |||||||||||  |||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||    
T  7851552 caagataattgtgtaatgatttttaatgaaattattatttttacatggttttaaataatgattaagatgt---acattgaaattattactgaaaccataa 7851456  T
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgt 163  Q
     ||||||||||||||||||||| |||||  || ||||||||||||||| ||||||||||||||    
T  7851455 ttatggtttaatggttttgatagtcttctatgagaaaccaaaataattttctaatggttttgt 7851393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 18762600 - 18762716
Alignment:
Q  45 atggttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaat 144  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||||||||| |||||||||||    
T  18762600 atggttttaaataatgattaagatgttatacactgaaattattaatgaaacaataagtatggtttaatgattttgatagtcttcattgagaaaccaaaat 18762699  T
Q  145 aattgtctaatggtttt 161  Q
    |||||||||||||||||    
T  18762700 aattgtctaatggtttt 18762716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 32556562 - 32556400
Alignment:
Q  1 caagataattgtgtaatggtttta-aattaaattattattggtacatggttttaaataatgattaagat-gttatacactgaaattattactgaaaccat 98  Q
    |||||||||||||||||| ||||  ||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  32556562 caagataattgtgtaatgattttttaatgaaattattattgttacatggttttaaataatgattaagatagttatacactgaaattattattgaaaccat 32556463  T
Q  99 aagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    || ||| ||||| |||||||||||||||||  ||  |||| |||||||||||||||| |||||    
T  32556462 aattattgtttagtggttttgataatcttctatgaaaaactaaaataattgtctaatcgtttt 32556400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 18762491 - 18762607
Alignment:
Q  45 atggttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaat 144  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||   ||||||| ||| ||    
T  18762491 atggttttaaataatgattaagaggttatacactgaaattattactgaaaccataagtatggtttaatggttttgatagtattgtatgtgaaaacaagat 18762590  T
Q  145 aattgtctaatggtttt 161  Q
    || ||| ||||||||||    
T  18762591 aaatgtgtaatggtttt 18762607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 28123142 - 28123068
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggt 158  Q
    |||||| ||||||||| |||||||||||||||||||||| | |||  |||||||||||| |||||||| ||||||    
T  28123142 tattacagaaaccatatgtatggtttaatggttttgatagtgttctatgtgaaaccaaactaattgtcaaatggt 28123068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 32556611 - 32556535
Alignment:
Q  90 tgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaat 166  Q
    ||||||||||| ||||||||||||||||||||| ||||   ||||||||||| |||||||| ||||| |||| ||||    
T  32556611 tgaaaccataaatatggtttaatggttttgatagtcttgcatgtgaaaccaagataattgtgtaatgattttttaat 32556535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 28123004 - 28122930
Alignment:
Q  91 gaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    ||||||||| ||||||||||||||||||||   | |||  | |||||||||| ||||||||||||||||||||||    
T  28123004 gaaaccatatgtatggtttaatggttttgacggtgttctatatgaaaccaaactaattgtctaatggttttgtaa 28122930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 18762422 - 18762498
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    ||||||||||| ||||||||||||||||||||||  || | ||   ||||||||||| |||||||| ||||||||||    
T  18762422 attactgaaacaataagtatggtttaatggtttttttagtattgcatgtgaaaccaagataattgtgtaatggtttt 18762498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 22038107 - 22038142
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  22038107 tactgaaaccataagtatggtttaatggttttgata 22038142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 28123317 - 28123278
Alignment:
Q  11 gtgtaatggttttaaattaaattattattggtacatggtt 50  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  28123317 gtgtaatggttttaaatgaaattattattggtacatggtt 28123278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 28123379 - 28123305
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    ||||||||||||||||||||| |||||||||||||| | |||  ||| ||||||| ||||  || ||||||||||    
T  28123379 tactgaaaccataagtatggtataatggttttgatagtgttcgatgtaaaaccaatataagggtgtaatggtttt 28123305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 28123578 - 28123504
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    ||||||||||||||||||||| |||||||||||||| | |||  ||| ||||||| ||||  || ||||||||||    
T  28123578 tactgaaaccataagtatggtataatggttttgatagtgttctatgtaaaaccaatataagggtgtaatggtttt 28123504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 7851603 - 7851530
Alignment:
Q  88 actgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    ||||||||||||||| |||||||||| |||||||| ||||   ||| ||||||| |||||||| ||||| ||||    
T  7851603 actgaaaccataagtgtggtttaatgattttgatagtcttgtatgtaaaaccaagataattgtgtaatgatttt 7851530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 15034078 - 15034003
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttg 162  Q
    ||||||||||||||||||||| |||||||||||||| | |||  ||| |||||| | | || || |||||||||||    
T  15034078 tactgaaaccataagtatggtataatggttttgatagtgttctatgtaaaaccatacttatggtgtaatggttttg 15034003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 122
Target Start/End: Original strand, 22038313 - 22038343
Alignment:
Q  92 aaaccataagtatggtttaatggttttgata 122  Q
    |||||||||||||||||||||||||||||||    
T  22038313 aaaccataagtatggtttaatggttttgata 22038343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 22038653 - 22038687
Alignment:
Q  131 tgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    |||||||||||| ||||||||||||||||||||||    
T  22038653 tgtgaaaccaaactaattgtctaatggttttgtaa 22038687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 557 - 229
Alignment:
Q  17 tggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatggtt 116  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  557 tggttttaaataaaattattattgggacatggttttaaataatgattaacatgttatacactgaaattattactgaaaccataagtatggtttcatggtt 458  T
Q  117 ttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaataaaacaaaagaacaaatgtgataaagatttaaactattattcactaatta 216  Q
    |||||| |||  | |||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||    
T  457 ttgatagtctctaatgtgaaaccaaagtaattgtctaatggttttgtaataaaacaaaataaaaaatgtgataaacatttaaactattattcactaatta 358  T
Q  217 tagtacacacttataccatttaaaacaattaccgaatgtgaattaatcaatcagtgaccac-----nnnnnnnnnaaacctcattatctctcttttgttt 311  Q
    ||||||||||||||| |||||||| |||||| | |||||||||||||||||||||||||||              ||||||||| ||||| |||||||||    
T  357 tagtacacacttataacatttaaaccaattatcaaatgtgaattaatcaatcagtgaccactttttttttttgtaaaacctcatcatctcccttttgttt 258  T
Q  312 cttccgttgtaaatcgaatttctgccttt 340  Q
    | |||||||||||||||||||||||||||    
T  257 catccgttgtaaatcgaatttctgccttt 229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 703 - 551
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  703 caagataattgtgtaatggttttaaatgaaattattattggtacatggttttaaataatgattaagatg-------ctgaaattattactgaaaccataa 611  T
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    |||||||||||| | ||||| | |||||| |||||||||||||||||| |||| |||||||    
T  610 gtatggtttaatag-tttgaaagtcttcaatgtgaaaccaaaataattatctagtggtttt 551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 797 - 681
Alignment:
Q  45 atggttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaat 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||| ||| ||||   ||| ||||||| ||    
T  797 atggttttaaataatgattaagatgttatacactgaaattattactgaaatcataagtatcgtttaatgttttttatagtcttgtatgtcaaaccaagat 698  T
Q  145 aattgtctaatggtttt 161  Q
    |||||| ||||||||||    
T  697 aattgtgtaatggtttt 681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 102 - 21
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    ||||||||||||||||||||||||||||||||||||||| | |||  |||||||||||||||||||||||||||||||||||    
T  102 tattactgaaaccataagtatggtttaatggttttgatagtgttctatgtgaaaccaaaataattgtctaatggttttgtaa 21  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 865 - 790
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    |||||||||||||||||||||||| ||||||||||||| ||||   ||||||||||| |||||||| ||||||||||    
T  865 attactgaaaccataagtatggtt-aatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 45 - 340
Target Start/End: Complemental strand, 10564273 - 10563975
Alignment:
Q  45 atggttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaat 144  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||| | ||| || ||||||||||||||    
T  10564273 atggttttaaataatgattaaaatgttatacactgaaattattactgaaaccataagtatgacttaatggttttgacagtctacaatgtgaaaccaaaat 10564174  T
Q  145 aattgtctaatggttttgtaataaaacaaaagaacaaatgtgataaagatttaaactattattcactaattatagtacacact--tataccatttaaaac 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||  |||| ||||||||||    
T  10564173 aattgtctaatggttttgtaataaaacaaaagaacaaatgtgataaacatttaaaccattattcactaactatagtacacacttatataacatttaaaac 10564074  T
Q  243 aattaccgaatgtgaattaatcaatcagtgaccac-nnnnnnnnnaaacctcattatctctcttttgtttcttccgttgtaaatcgaatttctgccttt 340  Q
    ||||| | ||||||||||||||||| |||||||||          ||||||||| |||||||||||||||||||||||| |||  ||||||||||||||    
T  10564073 aattatcaaatgtgaattaatcaattagtgaccactttttttgtaaaacctcatcatctctcttttgtttcttccgttgcaaaatgaatttctgccttt 10563975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 45 - 266
Target Start/End: Complemental strand, 12283402 - 12283179
Alignment:
Q  45 atggttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaat 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||    
T  12283402 atggttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatgatttaatggttttgacagtcttcaatgtgaaaccaaaat 12283303  T
Q  145 aattgtctaatggttttgtaataaaacaaaagaacaaatgtgataaagatttaaactattattcactaattatagtacacact--tataccatttaaaac 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| |||| |||||||||||||  |||| ||||||||||    
T  12283302 aattgtctaatggttttgtaataaaacaaaagaacaaatgtgataaacattgaaaccattattccctaactatagtacacacttatataacatttaaaac 12283203  T
Q  243 aattaccgaatgtgaattaatcaa 266  Q
    ||||| | ||||||||||||||||    
T  12283202 aattatcaaatgtgaattaatcaa 12283179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 45402720 - 45402884
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 100  Q
    |||||||||||||||||| |||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45402720 caagataattgtgtaatgatttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactgaaattattattgaaaccataa 45402819  T
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
     ||||||||||||||||||||| ||||   || |||||||||||||| |||||||||||||||||    
T  45402820 ttatggtttaatggttttgatagtcttttatgagaaaccaaaataatagtctaatggttttgtaa 45402884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 6797235 - 6797389
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 100  Q
    ||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6797235 caagataattgtgtaatggtttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactgaaactattactgaaaccataa 6797334  T
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaat 155  Q
     ||||||||||||||||||||| ||||   || ||||||||||||||||||||||    
T  6797335 ttatggtttaatggttttgatagtcttttatgagaaaccaaaataattgtctaat 6797389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 21405881 - 21406027
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 100  Q
    |||||||||| |||||||||||||| | |||||||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21405881 caagataattatgtaatggttttaa-tgaaattattattattacatgactttaaataatgattaagatgttatacactgaaattattactgaaatcataa 21405979  T
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataatt 148  Q
     ||||||||||||||||||||| |||||  |  |||||||||||||||    
T  21405980 ttatggtttaatggttttgatagtcttctataagaaaccaaaataatt 21406027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 12283511 - 12283395
Alignment:
Q  45 atggttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaat 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | ||   ||||||||||| ||    
T  12283511 atggttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatgattttgacagtattgtatgtgaaaccaagat 12283412  T
Q  145 aattgtctaatggtttt 161  Q
    |||||| ||||||||||    
T  12283411 aattgtgtaatggtttt 12283395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 12283620 - 12283504
Alignment:
Q  45 atggttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaat 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | ||   ||||||||||| ||    
T  12283620 atggttttaaataatgattaagatgttatacactgaaattattaccgaaaccataagtatggtttaatggttttgacagtattgtatgtgaaaccaagat 12283521  T
Q  145 aattgtctaatggtttt 161  Q
    |||||| ||||||||||    
T  12283520 aattgtgtaatggtttt 12283504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 12283162 - 12283079
Alignment:
Q  82 attattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    |||||||||||||| |||||||||||||||||||||||||| | |||  ||||||||||| |||||||||||||||||||||||    
T  12283162 attattactgaaactataagtatggtttaatggttttgatagtgttctatgtgaaaccaacataattgtctaatggttttgtaa 12283079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 10564548 - 10564457
Alignment:
Q  71 tatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttg 162  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||   |||||||||| ||  ||||| |||||||||||    
T  10564548 tatacactgaaattatgactgaaaccataagtatggtttaatggttttgatagtattgtatgtgaaaccataaatattgtgtaatggttttg 10564457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 71 - 161
Target Start/End: Complemental strand, 10564356 - 10564266
Alignment:
Q  71 tatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||| | ||   ||||||||||| |||| ||| ||||||||||    
T  10564356 tatacactgaaattatttctgaaaccataagtatgatttaatggttttgatagtattgtatgtgaaaccaagataaatgtgtaatggtttt 10564266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 10564643 - 10564554
Alignment:
Q  71 tatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttt 160  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||   |||||||||| ||  ||||| |||||||||    
T  10564643 tatacactgaaattatgactgaaaccataagtatggtttaatggttttgatattattgtatgtgaaaccataaatattgtgtaatggttt 10564554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 45402666 - 45402742
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    |||||||||||||||||||||||||||||||||||||| ||||   ||||||||||| |||||||| ||||| ||||    
T  45402666 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatgatttt 45402742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 10563908 - 10563830
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttg 162  Q
    |||||||||||||||||||||||||||| |||||||||| | || | ||||||||||| |||||||| ||||| |||||    
T  10563908 tattactgaaaccataagtatggtttaacggttttgatagtattaaatgtgaaaccaagataattgtgtaatgattttg 10563830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 10564452 - 10564399
Alignment:
Q  71 tatacactgaaattattactgaaaccataagtatggtttaatggttttgataat 124  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  10564452 tatacactgaaattatgaccgaaaccataagtatggtttaatggttttgataat 10564399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 6797182 - 6797257
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    ||||||||||||||| |||||||||||||||||||||| ||||   ||||||||||| |||||||| ||||||||||    
T  6797182 attactgaaaccata-gtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 6797257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 10564725 - 10564648
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttg 162  Q
    |||||||||||||||||||||||||||||||||||||| | ||   |||||||||| ||  ||||| |||||||||||    
T  10564725 attactgaaaccataagtatggtttaatggttttgatagtattgtatgtgaaaccataaatattgtgtaatggttttg 10564648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 4721019 - 4721054
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  4721019 tactgaaaccataagtatggtttaatggttttgata 4721054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 13420428 - 13420502
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    |||||||||||||||||||||| ||||||||||||| | ||| |||| |||||| | | || || ||||||||||    
T  13420428 tactgaaaccataagtatggttgaatggttttgatagtgttctttgtaaaaccatacttatggtgtaatggtttt 13420502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 13420629 - 13420664
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||| ||||||||||||||    
T  13420629 tactgaaaccataagtatggtgtaatggttttgata 13420664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 13420691 - 13420730
Alignment:
Q  11 gtgtaatggttttaaattaaattattattggtacatggtt 50  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  13420691 gtgtaatggttttaagtgaaattattattggtacatggtt 13420730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 13420490 - 13420526
Alignment:
Q  11 gtgtaatggttttaaattaaattattattggtacatg 47  Q
    ||||||||||||||| | |||||||||||||||||||    
T  13420490 gtgtaatggttttaagtgaaattattattggtacatg 13420526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 175; Significance: 4e-94; HSPs: 7)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 45 - 340
Target Start/End: Original strand, 16190 - 16487
Alignment:
Q  45 atggttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaat 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||| | |||||| ||||||||||||||    
T  16190 atggttttaaataatgattaagatgttatacactgaaattattactaaaactataagtatggcttaatggttttgacagtcttcaatgtgaaaccaaaat 16289  T
Q  145 aattgtctaatggttttgtaataaaacaaaagaacaaatgtgataaagatttaaactattattcactaattatagtacacacttatacca-tttaaaaca 243  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||  |  ||||||||    
T  16290 aattgtgtaatggttttgtaataaaacaaaagaacaaatgtgataaacatttaaaccattattcactaactatagtacacacttatataacattaaaaca 16389  T
Q  244 attaccgaatgtgaattaatcaatcagtgaccac-nnnnnnnnnaaacctcattatctctcttttgtttcttccgttgtaaatcgaatttctgccttt 340  Q
    |||||| |||||||||| ||||||||||||||||          |||||| || |||||||||||||||||||||||| |||  ||||||||||||||    
T  16390 attaccaaatgtgaatttatcaatcagtgaccactttttttgtaaaaccttatcatctctcttttgtttcttccgttgcaaaatgaatttctgccttt 16487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 22584 - 22680
Alignment:
Q  66 gatgttatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttg 162  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||   ||||||||||| |||| ||| |||||||||||    
T  22584 gatgttatacactaaaattattactgaaaccataagtatggtttaatggttttgatagtattgtatgtgaaaccaagataaatgtgtaatggttttg 22680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 22770 - 22870
Alignment:
Q  56 taatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaat 155  Q
    ||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| | ||   |||||||||||||||||||| ||||    
T  22770 taatgattttgatgttatccactgaaattattactgaaaccataagtatggtttaatgattttgatagtattgtatgtgaaaccaaaataattgtgtaat 22869  T
Q  156 g 156  Q
    |    
T  22870 g 22870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 16106 - 16197
Alignment:
Q  70 ttatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||   |||||||||||||||| | | ||||||||||    
T  16106 ttatacactgaaattattactgaaaccataagtatggtttaatggttttgatagtattgtatgtgaaaccaaaataaatatgtaatggtttt 16197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 22877 - 22931
Alignment:
Q  67 atgttatacactgaaattattactgaaaccataagtatggtttaatggttttgat 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22877 atgttatacactgaaattattactgaaaccataagtatggtttaatggttttgat 22931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 22680 - 22780
Alignment:
Q  66 gatgttatacactgaaattattactgaaaccataag----tatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||| | ||   ||||||||||| |||| ||| ||||| ||||    
T  22680 gatgttatacactgaaattattactgaaaccataagtatttatggtttaatggttttgatagtattgtatgtgaaaccaagataaatgtgtaatgatttt 22779  T
Q  162 g 162  Q
    |    
T  22780 g 22780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 16511 - 16589
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttg 162  Q
    ||||||||||||||||||||||||||||||||||| ||| | || | ||||||||||| || ||||| |||||||||||    
T  16511 tattactgaaaccataagtatggtttaatggttttaatagtattaaatgtgaaaccaagattattgtgtaatggttttg 16589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 51575 - 51413
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 100  Q
    ||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51575 caagataattgtgtaatggtttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 51476  T
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgt 163  Q
     ||||||||||||||||||||| ||||   || ||||||||||||||||||||||||||||||    
T  51475 ttatggtttaatggttttgatagtcttatatgagaaaccaaaataattgtctaatggttttgt 51413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 51629 - 51553
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    ||||| |||||||||||||||||||||||||||||||| ||||   ||||||||||| |||||||| ||||||||||    
T  51629 attaccgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 51553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 7183353 - 7183191
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 100  Q
    ||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7183353 caagataattgtgtaatggtttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 7183254  T
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgt 163  Q
     |||||||||||| |||||||| |||||  || ||||||||||||||||||||||||||||||    
T  7183253 ttatggtttaatgattttgatagtcttctatgagaaaccaaaataattgtctaatggttttgt 7183191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 33868995 - 33868834
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 100  Q
    |||||||||||||||||| |||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33868995 caagataattgtgtaatgatttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 33868896  T
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttg 162  Q
     ||||||||||||||||||||| |||||  || ||||||||||||||||||||||| |||||    
T  33868895 ttatggtttaatggttttgatagtcttctatgagaaaccaaaataattgtctaatgattttg 33868834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 39056302 - 39056464
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 100  Q
    ||||||||||||||||||||||| ||| |||| |||||||  |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  39056302 caagataattgtgtaatggtttttaatgaaatgattattgtgacatggttttaaataacgattaagatggtatacactgaaattattactgaaaccataa 39056401  T
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgt 163  Q
     ||||||||||||||||||||| |||||  || ||||||||||||||||||||||||||||||    
T  39056402 ttatggtttaatggttttgatagtcttctatgagaaaccaaaataattgtctaatggttttgt 39056464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 5 - 165
Target Start/End: Original strand, 15912985 - 15913145
Alignment:
Q  5 ataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtat 104  Q
    ||||||||||||||||||| ||| |||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  15912985 ataattgtgtaatggtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacactaaaattattactgaaaccataattat 15913084  T
Q  105 ggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    ||||||||| |||||||| |||||  || ||||||||||||||||| | ||||||||||||    
T  15913085 ggtttaatgattttgatagtcttctatgagaaaccaaaataattgtatgatggttttgtaa 15913145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 7183407 - 7183331
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    |||||||||||||||||||||||||||||||||||||| ||||   ||||||||||| |||||||| ||||||||||    
T  7183407 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 7183331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 39056248 - 39056324
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    |||||||||||||||||||||||||||||||||||||| ||||   ||||||||||| |||||||| ||||||||||    
T  39056248 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 39056324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 33869049 - 33868973
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    ||||||||||||| |||||||||||||||||||||||| ||||   ||||||||||| |||||||| ||||| ||||    
T  33869049 attactgaaaccaaaagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatgatttt 33868973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 15912943 - 15913003
Alignment:
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    |||||||||||||||||||||| ||||   ||||||||||| |||||||| ||||||||||    
T  15912943 gtatggtttaatggttttgatagtcttgtatgtgaaaccaatataattgtgtaatggtttt 15913003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 25192336 - 25192392
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaata 57  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||| ||||| ||||    
T  25192336 caagataagggtgtaatggttttaaatgaaattattattggtacatagttttgaata 25192392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 30407683 - 30407718
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30407683 tactgaaaccataagtatggtataatggttttgata 30407718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 30407884 - 30407919
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30407884 tactgaaaccataagtatggtataatggttttgata 30407919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 30408086 - 30408121
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30408086 tactgaaaccataagtatggtataatggttttgata 30408121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 30408691 - 30408726
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30408691 tactgaaaccataagtatggtataatggttttgata 30408726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 30408891 - 30408926
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30408891 tactgaaaccataagtatggtataatggttttgata 30408926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 25192284 - 25192358
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    ||||||||||||| |||||||||||||||||||| | | |||  ||| ||||||| ||||  || ||||||||||    
T  25192284 tactgaaaccatacgtatggtttaatggttttgaaagtgttctatgtaaaaccaagataagggtgtaatggtttt 25192358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 6054475 - 6054427
Alignment:
Q  107 tttaatggttttgataatcttcattgtgaaaccaaaataattgtctaat 155  Q
    |||||||||||||||  |||||  || ||||||||||||||||||||||    
T  6054475 tttaatggttttgattgtcttctatgagaaaccaaaataattgtctaat 6054427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 5 - 163
Target Start/End: Original strand, 24024478 - 24024636
Alignment:
Q  5 ataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtat 104  Q
    ||||||||||||||||||| ||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24024478 ataattgtgtaatggtttttaatgaaattattattgttacatagttttaaataatgattaagatgttatacactgaaattattactgaaaccataattat 24024577  T
Q  105 ggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgt 163  Q
    ||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||    
T  24024578 ggtttaatggttttgataatcttctatgagaaaccaaaataattgtctaatggttttgt 24024636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 28056212 - 28056102
Alignment:
Q  5 ataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtat 104  Q
    ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||| || |||||||||||||||||||||||||| ||||| ||    
T  28056212 ataattgtgtaatggttttaaatgaaattattaatggtacatgggtttaaataatgattaaaatattatacactgaaattattactgaaacaataagcat 28056113  T
Q  105 ggtttaatggt 115  Q
    |||||||||||    
T  28056112 ggtttaatggt 28056102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 78 - 168
Target Start/End: Complemental strand, 30771490 - 30771400
Alignment:
Q  78 tgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaataa 168  Q
    |||||| |||||| ||||||||||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||||||||| ||||||    
T  30771490 tgaaatcattactaaaaccataagtatggcttaatggttttgacagtcttcaatgtgaaaccaaaataattgtctaatggttttttaataa 30771400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 30771409 - 30771316
Alignment:
Q  49 ttttaaataatgattaagatgttatacactgaaattatt-actgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaa 141  Q
    |||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||| | |||||| |||||||||||    
T  30771409 tttttaataatgattaagatgttatacactgaaattatagactgaaaccataagtatggcttaatggttttgacagtcttcaatgtgaaaccaa 30771316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 28048325 - 28048244
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    ||||||||||||||||||||||||||||||||||||||| | |||  |||||||||||| |||||||||| |||||||||||    
T  28048325 tattactgaaaccataagtatggtttaatggttttgatagtgttctatgtgaaaccaaactaattgtctagtggttttgtaa 28048244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 28056268 - 28056194
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    |||||||||||||||||||||||||||||||||||| ||||   ||| ||||||| |||||||| ||||||||||    
T  28056268 tactgaaaccataagtatggtttaatggttttgatagtcttgtatgtaaaaccaatataattgtgtaatggtttt 28056194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 21173668 - 21173703
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  21173668 tactgaaaccataagtatggtttaatggttttgata 21173703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 27970607 - 27970572
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  27970607 tactgaaaccataagtatggtttaatggttttgata 27970572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 44348258 - 44348293
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  44348258 tactgaaaccataagtatggtttaatggttttgata 44348293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 44350782 - 44350817
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  44350782 tactgaaaccataagtatggtttaatggttttgata 44350817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 21173498 - 21173533
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||| ||||||||||||||||    
T  21173498 tactgaaaccataagtatgatttaatggttttgata 21173533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 122
Target Start/End: Complemental strand, 27970401 - 27970371
Alignment:
Q  92 aaaccataagtatggtttaatggttttgata 122  Q
    |||||||||||||||||||||||||||||||    
T  27970401 aaaccataagtatggtttaatggttttgata 27970371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 121
Target Start/End: Complemental strand, 27970777 - 27970743
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgat 121  Q
    |||| ||||||||||||||||||||||||||||||    
T  27970777 tactaaaaccataagtatggtttaatggttttgat 27970743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 28056566 - 28056532
Alignment:
Q  131 tgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    |||||||||||| ||||||||||||||||||||||    
T  28056566 tgtgaaaccaaactaattgtctaatggttttgtaa 28056532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 122
Target Start/End: Complemental strand, 28056906 - 28056876
Alignment:
Q  92 aaaccataagtatggtttaatggttttgata 122  Q
    |||||||||||||||||||||||||||||||    
T  28056906 aaaccataagtatggtttaatggttttgata 28056876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 122
Target Start/End: Complemental strand, 30767614 - 30767584
Alignment:
Q  92 aaaccataagtatggtttaatggttttgata 122  Q
    |||||||||||||||||||||||||||||||    
T  30767614 aaaccataagtatggtttaatggttttgata 30767584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 122
Target Start/End: Complemental strand, 30771777 - 30771747
Alignment:
Q  92 aaaccataagtatggtttaatggttttgata 122  Q
    |||||||||||||||||||||||||||||||    
T  30771777 aaaccataagtatggtttaatggttttgata 30771747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 122
Target Start/End: Original strand, 44348464 - 44348494
Alignment:
Q  92 aaaccataagtatggtttaatggttttgata 122  Q
    |||||||||||||||||||||||||||||||    
T  44348464 aaaccataagtatggtttaatggttttgata 44348494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 44348804 - 44348838
Alignment:
Q  131 tgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    |||||||||||| ||||||||||||||||||||||    
T  44348804 tgtgaaaccaaactaattgtctaatggttttgtaa 44348838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 27970236 - 27970203
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttga 120  Q
    |||||||||||||| |||||||||||||||||||    
T  27970236 tactgaaaccataaatatggtttaatggttttga 27970203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 28056741 - 28056708
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttga 120  Q
    |||||||||||||| |||||||||||||||||||    
T  28056741 tactgaaaccataaatatggtttaatggttttga 28056708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 1820 - 1658
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 100  Q
    ||||||||||||||||||||||| ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1820 caagataattgtgtaatggtttttaatgaaagtattattgttacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 1721  T
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgt 163  Q
     ||||||||||||||||||||| ||||   || ||||||||||||||||||||||||||||||    
T  1720 ttatggtttaatggttttgatattcttttatgagaaaccaaaataattgtctaatggttttgt 1658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 1874 - 1798
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    |||||||||||||||||||||||||||||||||||||| ||||   ||||||||||| |||||||| ||||||||||    
T  1874 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 1798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 119418 - 119256
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 100  Q
    ||||||||||||||||||||||| ||| |||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  119418 caagataattgtgtaatggtttttaatgaaattattattgttacatagttttaaataatgattaagatgttatatactgaaattattactgaaaccataa 119319  T
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgt 163  Q
     ||||||||||||||||||||| ||||   || ||||||||||||||||||||||||||||||    
T  119318 ttatggtttaatggttttgatagtcttatatgagaaaccaaaataattgtctaatggttttgt 119256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 119472 - 119396
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    |||||||||||||||||||||||||||||||||||||| ||||   ||||||||||| |||||||| ||||||||||    
T  119472 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 119396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 209542 - 209380
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 100  Q
    ||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  209542 caagataattgtgtaatggtttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactgaaattattactgaaacaataa 209443  T
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgt 163  Q
     ||||||||||||||||||||| ||||   || |||||||||||||||||||||| |||||||    
T  209442 ttatggtttaatggttttgatagtcttatatgagaaaccaaaataattgtctaattgttttgt 209380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 209596 - 209520
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    |||||||||||||||||||| ||||||||||||||||||||||   ||||||||||| |||||||| ||||||||||    
T  209596 attactgaaaccataagtatagtttaatggttttgataatcttgtatgtgaaaccaagataattgtgtaatggtttt 209520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 171625 - 171559
Alignment:
Q  97 ataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgt 163  Q
    |||| ||||||||||||||||||||| ||||   || ||||||||||||||||||||||||||||||    
T  171625 ataattatggtttaatggttttgatagtcttatatgagaaaccaaaataattgtctaatggttttgt 171559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 110; Significance: 2e-55; HSPs: 5)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 45 - 174
Target Start/End: Original strand, 39205 - 39334
Alignment:
Q  45 atggttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaat 144  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||    
T  39205 atggttttaaataatgattaagatgttatgcactgaaattattactgaaaccatacgtatggtttaatggttttgataattttcaatgtgaaaccaaaat 39304  T
Q  145 aattgtctaatggttttgtaataaaacaaa 174  Q
    |||||||||||||||||||||| |||||||    
T  39305 aattgtctaatggttttgtaatgaaacaaa 39334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 39473 - 39554
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    ||||||||||||||||||||||||||||| ||||||||| | |||  |||||||||||| ||||||||||||||||||||||    
T  39473 tattactgaaaccataagtatggtttaatagttttgatagtgttctatgtgaaaccaaactaattgtctaatggttttgtaa 39554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 39850 - 39931
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    ||||||||||||||| |  ||||||||||||||||||| || |||  |||||||||||| ||||||||||||||||||||||    
T  39850 tattactgaaaccatcaacatggtttaatggttttgattatgttctatgtgaaaccaaactaattgtctaatggttttgtaa 39931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 39112 - 39184
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtt 159  Q
    ||||||||||||||||||||||||||| |||||||| | ||   ||| ||||||| |||||||| ||||||||    
T  39112 tactgaaaccataagtatggtttaatgattttgatagtgttgtatgtaaaaccaagataattgtgtaatggtt 39184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 38883 - 38957
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    |||||||||| | |||| |||||||||||||||||| | |||  |||||||| |||| ||||| |||||||||||    
T  38883 tactgaaaccgtgagtaaggtttaatggttttgatagtgttctatgtgaaacaaaaagaattgcctaatggtttt 38957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 450417 - 450258
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 100  Q
    ||||||||||||||||||||||| ||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  450417 caagataattgtgtaatggtttttaatgaaattattattgttacattgttttaaataatgattaagatgttatacactaaaattattactg-aaccataa 450319  T
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
     |||||||||||| |||||||| |||||  || ||||||||||||||||||||||||||||    
T  450318 ttatggtttaatgattttgatagtcttctatgagaaaccaaaataattgtctaatggtttt 450258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 450471 - 450395
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    |||||||||| |||||||||| |||||||||||||||| ||||   ||||||||||| |||||||| ||||||||||    
T  450471 attactgaaatcataagtatgatttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 450395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 7192 - 7354
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 100  Q
    ||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  7192 caagataattgtgtaatggtttttaataaaattattattgttacatggttttaaatagtgattaagatgttatacactgaaattattagtgaaaccataa 7291  T
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgt 163  Q
     |||| ||||||||||||||||  ||||  || ||||||||||||||| || |||||||||||    
T  7292 ttatgatttaatggttttgatagccttctatgagaaaccaaaataattatcaaatggttttgt 7354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 7138 - 7222
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaataaaa 170  Q
    |||||||||||||||||||||||||||| ||||||||| ||||   ||||||||||| |||||||| |||||||||| ||||||||    
T  7138 attactgaaaccataagtatggtttaattgttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt-taataaaa 7222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 32233207 - 32233045
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 100  Q
    |||||||||||||||||| |||| ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||  ||||||||| ||||| ||||    
T  32233207 caagataattgtgtaatgatttttaatgaaattattattgttacatggttttaaataatgattaagatgatatacacttgaattattaccgaaactataa 32233108  T
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgt 163  Q
     ||||||||||||||||||||| |||||  || ||||||||||||||||||||||||||||||    
T  32233107 ttatggtttaatggttttgatagtcttctatgagaaaccaaaataattgtctaatggttttgt 32233045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 41569044 - 41568914
Alignment:
Q  2 aagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgat----taagatgttatacactgaaattattactgaaacca 97  Q
    |||||||||||||||||||||| ||| |||||||||||| |||||| ||||||||||||||    |||||||||||||| | |||||||||||||||||     
T  41569044 aagataattgtgtaatggtttttaatgaaattattattgttacatgattttaaataatgatcgattaagatgttatacattaaaattattactgaaaccg 41568945  T
Q  98 taagtatggtttaatggttttgataatcttc 128  Q
    ||| |||||||||||| |||||||| |||||    
T  41568944 taattatggtttaatgattttgatagtcttc 41568914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 40219300 - 40219381
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    |||||||||||||||||||||||| |||||||||||||| | |||  |||||||||||| |||| |||||||||||||||||    
T  40219300 tattactgaaaccataagtatggtctaatggttttgatagtgttctatgtgaaaccaaactaatggtctaatggttttgtaa 40219381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 40219501 - 40219582
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    |||||||||||||||||||||||| |||||||||||||| | |||  |||||||||||| |||| |||||||||||||||||    
T  40219501 tattactgaaaccataagtatggtctaatggttttgatagtgttctatgtgaaaccaaactaatggtctaatggttttgtaa 40219582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 40219702 - 40219783
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    |||||||||||||||||||||||| |||||||||||||| | |||  |||||||||||| |||| |||||||||||||||||    
T  40219702 tattactgaaaccataagtatggtctaatggttttgatagtgttctatgtgaaaccaaactaatggtctaatggttttgtaa 40219783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 40219903 - 40219984
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    |||||||||||||||||||||||| |||||||||||||| | |||  |||||||||||| |||| |||||||||||||||||    
T  40219903 tattactgaaaccataagtatggtctaatggttttgatagtgttctatgtgaaaccaaactaatggtctaatggttttgtaa 40219984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 32233261 - 32233185
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    |||||||||||||||||||||||||||||||||||||| ||||   ||||||||||| |||||||| ||||| ||||    
T  32233261 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatgatttt 32233185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 51452987 - 51452934
Alignment:
Q  5 ataattgtgtaatggttttaaattaaattattattggtacatggttttaaataa 58  Q
    ||||||||||||||||||| ||| |||||||||||| |||||| ||||||||||    
T  51452987 ataattgtgtaatggtttttaatgaaattattattgttacatgattttaaataa 51452934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 11974977 - 11974942
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  11974977 tactgaaaccataagtatggtttaatggttttgata 11974942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 11975147 - 11975112
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||| ||||||||||||||||    
T  11975147 tactgaaaccataagtatgatttaatggttttgata 11975112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 11975317 - 11975282
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||| ||||||||||||||||||||||||||    
T  11975317 tactgaaactataagtatggtttaatggttttgata 11975282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 11975487 - 11975452
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||| ||||||||||||||    
T  11975487 tactgaaaccataagtatggtataatggttttgata 11975452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 9e-52; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 2 - 165
Target Start/End: Complemental strand, 13590682 - 13590519
Alignment:
Q  2 aagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataag 101  Q
    ||||||||||||||||| |||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||     
T  13590682 aagataattgtgtaatgatttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactcaaattattattgaacccataat 13590583  T
Q  102 tatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    ||||||||||||||||||||| ||||   || || |||||||||||||| ||||||||||||||    
T  13590582 tatggtttaatggttttgatagtcttatatgagagaccaaaataattgtttaatggttttgtaa 13590519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 20372413 - 20372259
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 100  Q
    ||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20372413 caagataattgtgtaatggtttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataa 20372314  T
Q  101 gtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgt 163  Q
            | |||||||||||| ||||   || ||||||||||||||||||||||||||||||    
T  20372313 --------ttatggttttgatagtcttatatgagaaaccaaaataattgtctaatggttttgt 20372259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 5077351 - 5077460
Alignment:
Q  54 aataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtcta 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||  || ||||||||||||||||||||    
T  5077351 aataatgattaagatgttatacactgaaattattactgaaaccatacttatggtttaatggttttgatagtcttctatgagaaaccaaaataattgtcta 5077450  T
Q  154 atggttttgt 163  Q
    ||| ||||||    
T  5077451 atgattttgt 5077460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 20481309 - 20481214
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggttttaaataatgattaagatgttatacactgaaattattactgaaacc 96  Q
    ||||||||||||||||||||||| ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20481309 caagataattgtgtaatggtttttaatgaaagtattattgttacatggttttaaataatgattaagatgttatacactgaaattattactgaaacc 20481214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 19845893 - 19845812
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    |||||| |||||||||||||||||||||||||||||||| | |||  |||||||||||| ||||||||||||||||||||||    
T  19845893 tattacagaaaccataagtatggtttaatggttttgatagtgttctatgtgaaaccaaactaattgtctaatggttttgtaa 19845812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 20372467 - 20372391
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    ||||| |||||||||||||||||||||||||||||||| ||||   ||||||||||| |||||||| ||||||||||    
T  20372467 attaccgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 20372391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 20481363 - 20481287
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    |||||||||||||||||||||||||||||||||||||| ||||   ||| ||||||| |||||||| ||||||||||    
T  20481363 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtaaaaccaagataattgtgtaatggtttt 20481287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 13674011 - 13673945
Alignment:
Q  97 ataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgt 163  Q
    |||| ||||||||||||||||||||| ||||   || ||||||||||||||||||||||||||||||    
T  13674011 ataattatggtttaatggttttgatagtcttatatgagaaaccaaaataattgtctaatggttttgt 13673945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 13590737 - 13590661
Alignment:
Q  85 attactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    ||||||||||||||||||||| |||||||||||||||| ||||   |||||||| || |||||||| ||||| ||||    
T  13590737 attactgaaaccataagtatgatttaatggttttgatagtcttgtatgtgaaacgaagataattgtgtaatgatttt 13590661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 19846130 - 19846056
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    |||||||||||||||||||||||||||||||||||| | |||  ||| ||||||| ||||  || ||||||||||    
T  19846130 tactgaaaccataagtatggtttaatggttttgatagtgttctatgtaaaaccaagataagggtgtaatggtttt 19846056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 19846078 - 19846029
Alignment:
Q  1 caagataattgtgtaatggttttaaattaaattattattggtacatggtt 50  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||||||||    
T  19846078 caagataagggtgtaatggttttaaatgaaattattattggtacatggtt 19846029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 37223310 - 37223275
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  37223310 tactgaaaccataagtatggtttaatggttttgata 37223275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 37223650 - 37223615
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  37223650 tactgaaaccataagtatggtttaatggttttgata 37223615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 37223820 - 37223785
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  37223820 tactgaaaccataagtatggtttaatggttttgata 37223785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 37223990 - 37223955
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  37223990 tactgaaaccataagtatggtttaatggttttgata 37223955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 37223480 - 37223447
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttga 120  Q
    ||||||||||||||||||||||||||||||||||    
T  37223480 tactgaaaccataagtatggtttaatggttttga 37223447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 37224160 - 37224125
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||| ||||||||    
T  37224160 tactgaaaccataagtatggtttaatgattttgata 37224125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 15992409 - 15992442
Alignment:
Q  45 atggttttaaataatgattaagatgttatacact 78  Q
    |||| |||||||||||||||||||||||||||||    
T  15992409 atggctttaaataatgattaagatgttatacact 15992442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 168634 - 168509
Alignment:
Q  45 atggttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaat 144  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| | |||| ||||||||||||||    
T  168634 atggttataaataatgattaagatgttatgcactgaaattattactgaaaccatacgtatggtttaatggttttgatagttttcaatgtgaaaccaaaat 168535  T
Q  145 aattgtctaatggttttgtaataaaa 170  Q
    ||||||||||||||||||||||||||    
T  168534 aattgtctaatggttttgtaataaaa 168509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 168401 - 168320
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    |||||||||||||||||||||| |||||||||||||||| | |||  |||||||||||| ||||| ||||||||||||||||    
T  168401 tattactgaaaccataagtatgatttaatggttttgatagtgttctatgtgaaaccaaactaattttctaatggttttgtaa 168320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 168727 - 168654
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttt 160  Q
    |||||||||||||||||||||||||||||||||||| | ||   ||| ||||||| |||||||  |||||||||    
T  168727 tactgaaaccataagtatggtttaatggttttgatagtgttgtatgtaaaaccaagataattgcgtaatggttt 168654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: scaffold0558
Description:

Target: scaffold0558; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 45 - 174
Target Start/End: Complemental strand, 10756 - 10627
Alignment:
Q  45 atggttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaat 144  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| ||||||||||||||    
T  10756 atggttttatataatgattaagatgttatgcactgaaattattactgaaaccatacgtatagtttaatggttttgatagttttcaatgtgaaaccaaaat 10657  T
Q  145 aattgtctaatggttttgtaataaaacaaa 174  Q
    |||| |||||||||||||||||||||||||    
T  10656 aattttctaatggttttgtaataaaacaaa 10627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 10513 - 10432
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    |||||||||||||||||||||||||||||||||||| || | |||  |||||||||||| ||||||||||||||||||||||    
T  10513 tattactgaaaccataagtatggtttaatggttttggtagtgttctatgtgaaaccaaactaattgtctaatggttttgtaa 10432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 10136 - 10055
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    ||||| ||||||||||||||||||||||||||||||||| | |||  |||||||||||| | ||||||||||||||||||||    
T  10136 tattattgaaaccataagtatggtttaatggttttgatagtgttctatgtgaaaccaaacttattgtctaatggttttgtaa 10055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 10831 - 10758
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttt 160  Q
    |||||||||||||||||||||||||||||||||||| | ||   ||| ||||||| |||||||| |||||||||    
T  10831 tactgaaaccataagtatggtttaatggttttgatagtgttgtatgtaaaaccaagataattgtgtaatggttt 10758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 8e-40; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 52 - 163
Target Start/End: Original strand, 44508953 - 44509064
Alignment:
Q  52 taaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtc 151  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||  || |||| |||||||||||||    
T  44508953 taaataatgattaagatgttatacactgaaattattattgaaaccataattatggtttaatggttttgatagtcttctatgagaaatcaaaataattgtc 44509052  T
Q  152 taatggttttgt 163  Q
    ||||||||||||    
T  44509053 taatggttttgt 44509064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 17225461 - 17225380
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    |||||| |||||||||||||||||||||||||||||||| | |||  |||||||||||| ||||||||||||||||||||||    
T  17225461 tattacagaaaccataagtatggtttaatggttttgatagtgttctatgtgaaaccaaactaattgtctaatggttttgtaa 17225380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 40005649 - 40005568
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    |||||||||||||||||||||||| |||||||||||||| | |||  |||||||||||| |||| |||||||||||||||||    
T  40005649 tattactgaaaccataagtatggtctaatggttttgatagtgttctatgtgaaaccaaactaatggtctaatggttttgtaa 40005568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 40005850 - 40005769
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    |||||||||||||||||||||||| |||||||||||||| | |||  |||||||||||| |||| |||||||||||||||||    
T  40005850 tattactgaaaccataagtatggtctaatggttttgatactgttctatgtgaaaccaaactaatggtctaatggttttgtaa 40005769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 40006045 - 40005970
Alignment:
Q  90 tgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    |||||||||||||||||| |||||||||||||| | |||  |||||||||||| |||| |||||||||||||||||    
T  40006045 tgaaaccataagtatggtctaatggttttgatagtgttctatgtgaaaccaaactaatggtctaatggttttgtaa 40005970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 40006217 - 40006145
Alignment:
Q  90 tgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttg 162  Q
    ||||||||||||||||||||||||||||||||| | |||  |||||||||| ||  || || |||||||||||    
T  40006217 tgaaaccataagtatggtttaatggttttgatagtgttctatgtgaaaccataagtatggtgtaatggttttg 40006145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 17057590 - 17057625
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  17057590 tactgaaaccataagtatggtttaatggttttgata 17057625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 17225700 - 17225665
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  17225700 tactgaaaccataagtatggtttaatggttttgata 17225665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 17590635 - 17590600
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  17590635 tactgaaaccataagtatggtttaatggttttgata 17590600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 40006131 - 40006099
Alignment:
Q  90 tgaaaccataagtatggtttaatggttttgata 122  Q
    |||||||||||||||||||||||||||||||||    
T  40006131 tgaaaccataagtatggtttaatggttttgata 40006099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 40006174 - 40006102
Alignment:
Q  90 tgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttg 162  Q
    |||||||||||||||||| |||||||||||||| | |||  |||||||||| ||  || || |||||||||||    
T  40006174 tgaaaccataagtatggtgtaatggttttgatagtgttctatgtgaaaccataagtatggtttaatggttttg 40006102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 17057388 - 17057423
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    |||||||||||||||||||||| |||||||||||||    
T  17057388 tactgaaaccataagtatggttgaatggttttgata 17057423  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 17057451 - 17057490
Alignment:
Q  11 gtgtaatggttttaaattaaattattattggtacatggtt 50  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  17057451 gtgtaatggttttagatgaaattattattggtacatggtt 17057490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 17057652 - 17057691
Alignment:
Q  11 gtgtaatggttttaaattaaattattattggtacatggtt 50  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  17057652 gtgtaatggttttaagtgaaattattattggtacatggtt 17057691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 17225638 - 17225599
Alignment:
Q  11 gtgtaatggttttaaattaaattattattggtacatggtt 50  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  17225638 gtgtaatggttttaagtgaaattattattggtacatggtt 17225599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 17590573 - 17590534
Alignment:
Q  11 gtgtaatggttttaaattaaattattattggtacatggtt 50  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  17590573 gtgtaatggttttaagtgaaattattattggtacatggtt 17590534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 17590774 - 17590735
Alignment:
Q  11 gtgtaatggttttaaattaaattattattggtacatggtt 50  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  17590774 gtgtaatggttttagatgaaattattattggtacatggtt 17590735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 17590837 - 17590802
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    |||||||||||||||||||||| |||||||||||||    
T  17590837 tactgaaaccataagtatggttgaatggttttgata 17590802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 118
Target Start/End: Complemental strand, 17225875 - 17225847
Alignment:
Q  90 tgaaaccataagtatggtttaatggtttt 118  Q
    |||||||||||||||||||||||||||||    
T  17225875 tgaaaccataagtatggtttaatggtttt 17225847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 6450 - 6371
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    ||||| ||||||||||||||||||||||||||||||||| | |||  |||||||  ||||||||| ||||||||||||||||    
T  6450 tattattgaaaccataagtatggtttaatggttttgatagtgttctatgtgaaa--aaaataattatctaatggttttgtaa 6371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 1228 - 1154
Alignment:
Q  84 tattactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggt 158  Q
    |||||| ||||||||| |||||||||||||||||||||| | |||  |||||||||||| |||||||| ||||||    
T  1228 tattacagaaaccatatgtatggtttaatggttttgatagtgttctatgtgaaaccaaactaattgtcaaatggt 1154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 1090 - 1016
Alignment:
Q  91 gaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    ||||||||| ||||||||||||||||||||   | |||  | |||||||||| ||||||||||||||||||||||    
T  1090 gaaaccatatgtatggtttaatggttttgacggtgttctatatgaaaccaaactaattgtctaatggttttgtaa 1016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 1602 - 1563
Alignment:
Q  11 gtgtaatggttttaaattaaattattattggtacatggtt 50  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  1602 gtgtaatggttttaaatgaaattattattggtacatggtt 1563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 1863 - 1789
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    ||||||||||||||||||||| |||||||||||||| | |||  ||| ||||||| ||||  || ||||||||||    
T  1863 tactgaaaccataagtatggtataatggttttgatagtgttctatgtaaaaccaatataagggtgtaatggtttt 1789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 1403 - 1364
Alignment:
Q  11 gtgtaatggttttaaattaaattattattggtacatggtt 50  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  1403 gtgtaatggttttaaatggaattattattggtacatggtt 1364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 1465 - 1391
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    ||||||||||||||||||||  |||||||||||||| | |||  ||| ||||||| ||||  || ||||||||||    
T  1465 tactgaaaccataagtatgggataatggttttgatagtgttcgatgtaaaaccaatataagggtgtaatggtttt 1391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 1664 - 1590
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgataatcttcattgtgaaaccaaaataattgtctaatggtttt 161  Q
    |||| |||||||||||||||| |||||||||||||| | |||  ||| ||||||| ||||  || ||||||||||    
T  1664 tactaaaaccataagtatggtataatggttttgatagtgttctatgtaaaaccaatataagggtgtaatggtttt 1590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 5973 - 5938
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  5973 tactgaaaccataagtatggtttaatggttttgata 5938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 8864 - 8899
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    |||||||||||||||||||||| |||||||||||||    
T  8864 tactgaaaccataagtatggttgaatggttttgata 8899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 19758 - 19723
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  19758 tactgaaaccataagtatggtttaatggttttgata 19723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 28872 - 28837
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  28872 tactgaaaccataagtatggtttaatggttttgata 28837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 31018 - 30983
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  31018 tactgaaaccataagtatggtttaatggttttgata 30983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 33393 - 33428
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  33393 tactgaaaccataagtatggtttaatggttttgata 33428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 33903 - 33938
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  33903 tactgaaaccataagtatggtttaatggttttgata 33938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 34073 - 34108
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  34073 tactgaaaccataagtatggtttaatggttttgata 34108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 19418 - 19385
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttga 120  Q
    ||||||||||||||||||||||||||||||||||    
T  19418 tactgaaaccataagtatggtttaatggttttga 19385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 34583 - 34616
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttga 120  Q
    ||||||||||||||||||||||||||||||||||    
T  34583 tactgaaaccataagtatggtttaatggttttga 34616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 19588 - 19553
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||| ||||||||||||||||    
T  19588 tactgaaaccataagtatgatttaatggttttgata 19553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 28702 - 28667
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||| ||||||||    
T  28702 tactgaaaccataagtatggtttaatgattttgata 28667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 33563 - 33598
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||| ||||||||||||||||    
T  33563 tactgaaaccataagtatgatttaatggttttgata 33598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 34243 - 34278
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    |||||||||||||||| |||||||||||||||||||    
T  34243 tactgaaaccataagtgtggtttaatggttttgata 34278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 19921 - 19893
Alignment:
Q  94 accataagtatggtttaatggttttgata 122  Q
    |||||||||||||||||||||||||||||    
T  19921 accataagtatggtttaatggttttgata 19893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 34416 - 34448
Alignment:
Q  90 tgaaaccataagtatggtttaatggttttgata 122  Q
    |||||||||||||||| ||||||||||||||||    
T  34416 tgaaaccataagtatgatttaatggttttgata 34448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 126256 - 126291
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  126256 tactgaaaccataagtatggtttaatggttttgata 126291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 128579 - 128614
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||||||||||||||||||    
T  128579 tactgaaaccataagtatggtttaatggttttgata 128614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 126426 - 126461
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    |||||||||||||| |||||||||||||||||||||    
T  126426 tactgaaaccataaatatggtttaatggttttgata 126461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 126601 - 126635
Alignment:
Q  131 tgtgaaaccaaaataattgtctaatggttttgtaa 165  Q
    |||||||||||| ||||||||||||||||||||||    
T  126601 tgtgaaaccaaactaattgtctaatggttttgtaa 126635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 347 - 312
Alignment:
Q  87 tactgaaaccataagtatggtttaatggttttgata 122  Q
    ||||||||||||||||||||| ||||||||||||||    
T  347 tactgaaaccataagtatggtataatggttttgata 312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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