View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_28 (Length: 375)
Name: NF20919_low_28
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 174 - 358
Target Start/End: Complemental strand, 36835724 - 36835540
Alignment:
| Q |
174 |
gttttatttatggaatgatacatttcactgtatcacaatttaaagtggacatggagagaaggaaaattagctcatacaatcaatatacccgttaacccaa |
273 |
Q |
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| T |
36835724 |
gttttatttatggaatgatacatttcattgtatcacaatttagagtggacatggagagaaggaaaattagctcatccaatcaatatacccgtttacccaa |
36835625 |
T |
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| Q |
274 |
tttcccttaattcttataccatctctcttccaaagccgcaatttcctcttcttgtacagactaagcaccacttgatggctcaact |
358 |
Q |
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| T |
36835624 |
tttcccttaattcttataccatctctcttccaaagccgcaatttcctcttcttgtacagactaagcaccacttgatggctcaact |
36835540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 36836000 - 36835902
Alignment:
| Q |
54 |
tcaacttaatattttactaatatccactaacctaagacattcaacttaattttatggataaattacattcacctccctt-aaagtagtgttaaatagca |
151 |
Q |
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|||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
36836000 |
tcaacttaattttttactaatctacactaacctaagacattcaacttaattttatggataaattacattcacctcccttaaaagtattgttaaatagca |
36835902 |
T |
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