View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20919_low_29 (Length: 372)

Name: NF20919_low_29
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20919_low_29
NF20919_low_29
[»] chr6 (3 HSPs)
chr6 (1-361)||(28995019-28995380)
chr6 (297-353)||(21237171-21237227)
chr6 (281-353)||(25085121-25085193)
[»] chr4 (7 HSPs)
chr4 (283-353)||(32934176-32934246)
chr4 (298-352)||(1758503-1758557)
chr4 (283-353)||(13834327-13834397)
chr4 (283-353)||(40407673-40407743)
chr4 (278-335)||(46781566-46781623)
chr4 (272-312)||(6365003-6365043)
chr4 (281-353)||(55132573-55132645)
[»] chr7 (4 HSPs)
chr7 (281-353)||(39608617-39608689)
chr7 (298-353)||(8062906-8062961)
chr7 (283-353)||(18942737-18942807)
chr7 (291-353)||(25688963-25689025)
[»] chr3 (1 HSPs)
chr3 (277-348)||(30669351-30669422)
[»] chr8 (2 HSPs)
chr8 (291-353)||(4586758-4586820)
chr8 (281-353)||(3662314-3662386)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 28995019 - 28995380
Alignment:
Q  1 ggttagttctttgtccaccannnnnnnataatctacttttaacttatnnnnnnntataggaaaagaaagtgactcaactaataatgcagagaacaaagca 100  Q
    ||||||||||||||||||||       ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  28995019 ggttagttctttgtccaccatttttttataatctacttttaacttataaaaaaatataggaaaagaaagtgactcaactaataatgcagagaacaaagca 28995118  T
Q  101 aaagaaagactaattgatctgatgtcatttttagagatcactttgaagttaacaaatcaaagaatttgcaaggtatgatgttgctatattattgtttttg 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  28995119 aaagaaagattaattgatctgatgtcatttttagagatcactttgaagctaacaaatcaaagaatttgcaaggtatgatgttagtatattattgtttttg 28995218  T
Q  201 ttgattttattcactcttaaggtgaaggttgtagctcaaatttgacaacttgaaaagtgatgttgtttaatat-aaaaagagataataatcatttttatc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  28995219 ttgattttattcactcttaaggtgaaggttgtagctcaaatttgacaacttgaaaagtgatgttgtttaatataaaaaagagataataatcatttttgtc 28995318  T
Q  300 cttgaatgtgtaaggagaaatcataatagtctctcagtgtattaaaattttaaatggtctct 361  Q
     ||||||||||||||||||||||||||| ||| | ||||||| |||||||||||||||||||    
T  28995319 tttgaatgtgtaaggagaaatcataataatctattagtgtatcaaaattttaaatggtctct 28995380  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 21237171 - 21237227
Alignment:
Q  297 atccttgaatgtgtaaggagaaatcataatagtctctcagtgtattaaaattttaaa 353  Q
    |||| |||||||||||  || | |||||||||||||||| |||||||||||| ||||    
T  21237171 atccctgaatgtgtaataagtagtcataatagtctctcaatgtattaaaattctaaa 21237227  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 353
Target Start/End: Complemental strand, 25085193 - 25085121
Alignment:
Q  281 gataataatcatttttatccttgaatgtgtaaggagaaatcataatagtctctcagtgtattaaaattttaaa 353  Q
    ||||||||| |||||  |||  |||||||||||||| ||||||||||||  || | ||||| |||||||||||    
T  25085193 gataataattattttggtcccagaatgtgtaaggagtaatcataatagtaccttaatgtatcaaaattttaaa 25085121  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 353
Target Start/End: Complemental strand, 32934246 - 32934176
Alignment:
Q  283 taataatcatttttatccttgaatgtgtaaggagaaatcataatagtctctcagtgtattaaaattttaaa 353  Q
    |||||||||||||  ||| |||||||||||||||  | |||||||||| |||| ||||| |||||||||||    
T  32934246 taataatcattttggtccctgaatgtgtaaggagtgaccataatagtccctcaatgtatcaaaattttaaa 32934176  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 1758557 - 1758503
Alignment:
Q  298 tccttgaatgtgtaaggagaaatcataatagtctctcagtgtattaaaattttaa 352  Q
    ||||||||||| |||  || ||||| |||||||||||| ||||||||||||||||    
T  1758557 tccttgaatgtttaataagtaatcacaatagtctctcaatgtattaaaattttaa 1758503  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 353
Target Start/End: Original strand, 13834327 - 13834397
Alignment:
Q  283 taataatcatttttatccttgaatgtgtaaggagaaatcataatagtctctcagtgtattaaaattttaaa 353  Q
    ||||||| |||||  ||| ||||||||||||||| || |||||||||| |||| | ||| |||||||||||    
T  13834327 taataattattttggtccctgaatgtgtaaggagtaaccataatagtccctcaatttatcaaaattttaaa 13834397  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 353
Target Start/End: Complemental strand, 40407743 - 40407673
Alignment:
Q  283 taataatcatttttatccttgaatgtgtaaggagaaatcataatagtctctcagtgtattaaaattttaaa 353  Q
    ||||||| |||||  ||| ||||||||||||||| || ||||||||||  ||| ||||| |||||||||||    
T  40407743 taataattattttggtccctgaatgtgtaaggagtaaccataatagtccttcaatgtatcaaaattttaaa 40407673  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 46781566 - 46781623
Alignment:
Q  278 agagataataatcatttttatccttgaatgtgtaaggagaaatcataatagtctctca 335  Q
    |||| |||||||||||||||||  ||||| ||||| ||  ||||||||||||||||||    
T  46781566 agaggtaataatcatttttatctctgaatttgtaacgaataatcataatagtctctca 46781623  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 6365043 - 6365003
Alignment:
Q  272 ataaaaagagataataatcatttttatccttgaatgtgtaa 312  Q
    |||||| ||||||||||||||||| ||| ||||||||||||    
T  6365043 ataaaatgagataataatcattttaatctttgaatgtgtaa 6365003  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 353
Target Start/End: Complemental strand, 55132645 - 55132573
Alignment:
Q  281 gataataatcatttttatccttgaatgtgtaaggagaaatcataatagtctctcagtgtattaaaattttaaa 353  Q
    ||||||| ||||||| |||  ||||||||||||||| | ||| |||||| | ||| ||||| |||||||||||    
T  55132645 gataatagtcattttgatctctgaatgtgtaaggagcagtcaaaatagtttttcaatgtatcaaaattttaaa 55132573  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 353
Target Start/End: Complemental strand, 39608689 - 39608617
Alignment:
Q  281 gataataatcatttttatccttgaatgtgtaaggagaaatcataatagtctctcagtgtattaaaattttaaa 353  Q
    |||||||||||||||  ||||||||||||||||||| | | | |||||| | ||| ||||| |||||||||||    
T  39608689 gataataatcattttagtccttgaatgtgtaaggagtagttacaatagtttttcaatgtatcaaaattttaaa 39608617  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 8062961 - 8062906
Alignment:
Q  298 tccttgaatgtgtaaggagaaatcataatagtctctcagtgtattaaaattttaaa 353  Q
    ||||||||||||||| ||| | ||| |||||||| ||| |||||||||||||||||    
T  8062961 tccttgaatgtgtaacgagtagtcacaatagtctgtcaatgtattaaaattttaaa 8062906  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 353
Target Start/End: Original strand, 18942737 - 18942807
Alignment:
Q  283 taataatcatttttatccttgaatgtgtaaggagaaatcataatagtctctcagtgtattaaaattttaaa 353  Q
    ||||| |||||||  ||| ||||||||||||||  | ||||||||||| |||| ||||| |||||||||||    
T  18942737 taatagtcattttggtccctgaatgtgtaaggaatagtcataatagtcactcaatgtatcaaaattttaaa 18942807  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 25688963 - 25689025
Alignment:
Q  291 atttttatccttgaatgtgtaaggagaaatcataatagtctctcagtgtattaaaattttaaa 353  Q
    ||||| || ||||||||||||| ||  ||||| |||||||||||| |||||||||||| ||||    
T  25688963 attttgattcttgaatgtgtaatgaataatcacaatagtctctcaatgtattaaaattctaaa 25689025  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 348
Target Start/End: Original strand, 30669351 - 30669422
Alignment:
Q  277 aagagataataatcatttttatccttgaatgtgtaaggagaaatcataatagtctctcagtgtattaaaatt 348  Q
    ||||| ||||| ||||||| |||| | ||||||||||||| | ||| |||||| ||||| ||||||||||||    
T  30669351 aagaggtaatagtcattttgatccctaaatgtgtaaggagtagtcacaatagtatctcaatgtattaaaatt 30669422  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 4586758 - 4586820
Alignment:
Q  291 atttttatccttgaatgtgtaaggagaaatcataatagtctctcagtgtattaaaattttaaa 353  Q
    ||||| |||||||||||||||| ||| | | | |||||||||| | |||||||||||||||||    
T  4586758 attttgatccttgaatgtgtaacgagtagttacaatagtctcttaatgtattaaaattttaaa 4586820  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 353
Target Start/End: Original strand, 3662314 - 3662386
Alignment:
Q  281 gataataatcatttttatccttgaatgtgtaaggagaaatcataatagtctctcagtgtattaaaattttaaa 353  Q
    ||||||||| |||||  ||| | | ||||||||||| || |||||||||| |||| ||||| |||||||||||    
T  3662314 gataataattattttggtccctaattgtgtaaggagtaaccataatagtccctcaatgtatcaaaattttaaa 3662386  T

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