View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_31 (Length: 368)
Name: NF20919_low_31
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 37926270 - 37925922
Alignment:
| Q |
18 |
ctatatgcatcacatcagcagcttgtattgaggcaaggagcaaataccgttgaccgtcgaaagccatctccg------------atatgcatacagagtg |
105 |
Q |
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| T |
37926270 |
ctatatgcatcacatcagcagcttgtattgaggcaagaagcaaataccgttgaccgtcgaaagccatctccggtccaatctccgatatgcatacagagtg |
37926171 |
T |
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| Q |
106 |
gtaaacggaacagtttgtaatcatttnnnnnnngatgaaggcagagacattgacattggtgctggtgaatctagcaagtattatgcagagagctgatgag |
205 |
Q |
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| T |
37926170 |
gtaaacggaacagtttgtaatcatttaaagaaagatgaaggcagagacattgacattggtgctggtaaatctagcaagtattatgcagagagctgatgag |
37926071 |
T |
|
| Q |
206 |
tcattgcttccaggagtatacaaagaggttggtgctgaacttaacgctaatccaactgcgttaggttccctcactcttttccgatcccttgttcaatcat |
305 |
Q |
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| T |
37926070 |
tcattgcttccaggagtatacaaagaggttggtgctgaacttaacgctgatccaactgcgttaggttccctcactcttttccgatcccttgttcaatcat |
37925971 |
T |
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| Q |
306 |
tctgttaccctctggctgcttacctggccacgcgacacaatcgtgcaca |
354 |
Q |
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| T |
37925970 |
tctgttaccctctggctgcttacctggccacgcgacacaatcgtgcaca |
37925922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 147 - 354
Target Start/End: Complemental strand, 37922546 - 37922339
Alignment:
| Q |
147 |
cagagacattgacattggtgctggtgaatctagcaagtattatgcagagagctgatgagtcattgcttccaggagtatacaaagaggttggtgctgaact |
246 |
Q |
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|||||||| | |||||||| ||||| ||||||||| |||||||| |||||||||||||||||||| | |||||||||||||||||| |||||| |||||| |
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| T |
37922546 |
cagagacagtaacattggtactggtaaatctagcaggtattatggagagagctgatgagtcattgttaccaggagtatacaaagagattggtgatgaact |
37922447 |
T |
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| Q |
247 |
taacgctaatccaactgcgttaggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacctggccacgcgacacaat |
346 |
Q |
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|||||| | ||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| ||||||||||| ||||| ||||||||| |
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| T |
37922446 |
caacgctgacccaactgcgttaggttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttaccttgccacacgacacaat |
37922347 |
T |
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| Q |
347 |
cgtgcaca |
354 |
Q |
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|||||||| |
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| T |
37922346 |
cgtgcaca |
37922339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 147 - 354
Target Start/End: Complemental strand, 37937820 - 37937613
Alignment:
| Q |
147 |
cagagacattgacattggtgctggtgaatctagcaagtattatgcagagagctgatgagtcattgcttccaggagtatacaaagaggttggtgctgaact |
246 |
Q |
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|||||||| | |||||||||||||||||||||||| |||||||| | |||| ||||| |||||| | || |||||||||||||| || ||||||| || |
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| T |
37937820 |
cagagacagtaacattggtgctggtgaatctagcaggtattatggaacgagccgatgaatcattgttacctggagtatacaaagaagtcggtgctgctct |
37937721 |
T |
|
| Q |
247 |
taacgctaatccaactgcgttaggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacctggccacgcgacacaat |
346 |
Q |
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||||||| | || || || |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| ||||| || ||||| |
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| T |
37937720 |
taacgctgaccccaccgccttaggttctctcactcttttccgatcacttgttcaatcattctgttaccctcttgctacttacctcgccacccgttacaat |
37937621 |
T |
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| Q |
347 |
cgtgcaca |
354 |
Q |
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||| |||| |
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| T |
37937620 |
cgttcaca |
37937613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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