View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_32 (Length: 366)
Name: NF20919_low_32
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 6 - 346
Target Start/End: Original strand, 41691252 - 41691592
Alignment:
| Q |
6 |
agaagcaaaggcatcaaaccttaagaacataatctgtgatcaaacttgtttcttgacctctcattgcagtggctttcatgaatgcatctatatctggatc |
105 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41691252 |
agaaacaaaggcatcaaaccttaagaacataatctgtgatcaaacttgtttcttgacctctcattgctgtggctttcatgaatgcatctatatctggatc |
41691351 |
T |
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| Q |
106 |
aggtttgattcctgcttgcttttctctccttgtcgtttcgacaagtaggtcatgccttgttccaactcccaagcatcgtcccgaaaaatccaaagtctct |
205 |
Q |
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| T |
41691352 |
aggtttgattcctgcttgcttttctctccttgttgtttcgacaagtaggtcatgccttgttccaactcccaagcatcgtcccgaaaaatccaaagtctct |
41691451 |
T |
|
| Q |
206 |
cttactgtcatctctccatgatgaagattatgttgactaatatatgcacatgttctttgaggaacaaattctgataactcatgaccacagtaagtgactc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41691452 |
cttactgtcatctctccatgatgaagattatgttgactaatatatgcacatgttctttgaggaacaaattctgataactcatgaccacagtaagtgactc |
41691551 |
T |
|
| Q |
306 |
ttcctgatacctattatagaaggccaatcacagtcaatggt |
346 |
Q |
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| T |
41691552 |
ttcctgatacctattatagaaggccaatcacagtcaatggt |
41691592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 317
Target Start/End: Complemental strand, 19538812 - 19538515
Alignment:
| Q |
20 |
caaaccttaagaacataatctgtgatcaaacttgtttcttgacctctcattgcagtggctttcatgaatgcatctatatctggatcaggtttgattcctg |
119 |
Q |
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| T |
19538812 |
caaaccttgagaatataatctgtaacaagacttgtttcttgaccttccattgatgttactttcatgaaagcatctatttcaggatctggtttgatacctg |
19538713 |
T |
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| Q |
120 |
cttgcttttctctccttgtcgtttc-gacaagtaggtcatgccttgttccaactcccaagcatcgtcccgaaaaatccaaagtctctcttactgtcatct |
218 |
Q |
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| T |
19538712 |
ctgctttttcacgtcttgacaattctgtcaa-catatcataccttgttccaactcccaagcagcgtccggagaagtccagcgtctctctcactgtcgttt |
19538614 |
T |
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| Q |
219 |
ctccatgatgaagattatgttgactaatatatgcacatgttctttgaggaacaaattctgataactcatgaccacagtaagtgactcttcctgatacct |
317 |
Q |
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| T |
19538613 |
ctccatggtgaagatcatgctgactaatataagcacatgttctttgaggaacaaattctgacagttcatgaccattgtaagtgactcttcctgatacct |
19538515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 218 - 312
Target Start/End: Complemental strand, 43526147 - 43526053
Alignment:
| Q |
218 |
tctccatgatgaagattatgttgactaatatatgcacatgttctttgaggaacaaattctgataactcatgaccacagtaagtgactcttcctga |
312 |
Q |
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| T |
43526147 |
tctccaaggtgaagatcatgctgactaatataagcacatgttctttgaggaacaaattctgacagttcatgaccattgtaagtgactcttcctga |
43526053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 276
Target Start/End: Original strand, 42136298 - 42136419
Alignment:
| Q |
155 |
tcatgccttgttccaactcccaagcatcgtcccgaaaaatccaaagtctctcttactgtcatctctccatgatgaagattatgttgactaatatatgcac |
254 |
Q |
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|||| |||||||||||| || || || ||||| |||||||| || | |||||| || ||||| ||||||| |||||| | ||||| || |||||| |||| |
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| T |
42136298 |
tcataccttgttccaacgcctaaacagcgtcctgaaaaatctaatgactctctcaccgtcatttctccataatgaaggtcatgttcaccaatataggcac |
42136397 |
T |
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| Q |
255 |
atgttctttgaggaacaaattc |
276 |
Q |
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| T |
42136398 |
atgttcttctagcaacaaattc |
42136419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 2873045 - 2872981
Alignment:
| Q |
212 |
gtcatctctccatgatgaagattatgttgactaatatatgcacatgttctttgaggaacaaattc |
276 |
Q |
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||||| |||||| ||||| || ||||||||||||||||||| ||||||||||| |||||||| |
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| T |
2873045 |
gtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttgaggtacaaattc |
2872981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 2901780 - 2901844
Alignment:
| Q |
212 |
gtcatctctccatgatgaagattatgttgactaatatatgcacatgttctttgaggaacaaattc |
276 |
Q |
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| T |
2901780 |
gtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttgaggtacaaattc |
2901844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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