View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_33 (Length: 361)
Name: NF20919_low_33
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 3 - 347
Target Start/End: Original strand, 52300902 - 52301271
Alignment:
| Q |
3 |
cataggatcagagtgttgtgtactataaattaagccttgtggtttccacattcatcgtggtct-----------------gcatatcgctgcttttgtct |
85 |
Q |
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| T |
52300902 |
cataggatcagagtgttgtgtactataaattaagccttgtggtttccacattcatcgtggtctaccctctggtataatctgcatatcgctgcttttgtct |
52301001 |
T |
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| Q |
86 |
taggcta--------gtaattaacgatgaagaactcatttagatggagctgttattactttgtgctaatcaatatgttcatgttgcattttacagtaagg |
177 |
Q |
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| T |
52301002 |
taggctactaattaagtaattaacgatgaagaactcatttagatggagctgttattactttgtgctaatcaatatgttcatgttgcattttacagtaagg |
52301101 |
T |
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| Q |
178 |
tcccaactgacaacagacttctataagtcatcttgtcctaaccttacaaagatagtaaggaaagaggttgtaaaagctctaaagaatgagatgagaatgg |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52301102 |
tcccaactgacaacagacttctataagtcatcttgtcctaaccttacaaagatagtaaggaaagaggttgtaaaagctctaaagaatgagatgagaatgg |
52301201 |
T |
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| Q |
278 |
gtgcttctttgcttcgtcttcactttcatgattgctttgtcaatgtaagcttaattacttgagatacatg |
347 |
Q |
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| T |
52301202 |
gtgcttctttgcttcgtcttcactttcatgattgctttgtcaatgtaagcttaattacttgagatacatg |
52301271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 10067939 - 10067887
Alignment:
| Q |
274 |
atgggtgcttctttgcttcgtcttcactttcatgattgctttgtcaatgtaag |
326 |
Q |
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| T |
10067939 |
atgggtgcttctttactacgcttgcactttcatgattgctttgttaatgtaag |
10067887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 272 - 326
Target Start/End: Complemental strand, 17549508 - 17549454
Alignment:
| Q |
272 |
gaatgggtgcttctttgcttcgtcttcactttcatgattgctttgtcaatgtaag |
326 |
Q |
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| T |
17549508 |
gaatggctgcttctttgcttcgtcttcactttcatgattgctttgtaaatgtaag |
17549454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 27201432 - 27201480
Alignment:
| Q |
274 |
atgggtgcttctttgcttcgtcttcactttcatgattgctttgtcaatg |
322 |
Q |
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| T |
27201432 |
atgggtgcttcattgcttcgtcttcatttccatgattgctttgtcaatg |
27201480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 325
Target Start/End: Original strand, 23229807 - 23229842
Alignment:
| Q |
290 |
ttcgtcttcactttcatgattgctttgtcaatgtaa |
325 |
Q |
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| T |
23229807 |
ttcgtcttcattttcatgattgctttgtcaatgtaa |
23229842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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