View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_34 (Length: 360)
Name: NF20919_low_34
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 28 - 300
Target Start/End: Original strand, 33415617 - 33415888
Alignment:
| Q |
28 |
atcaatcatttgtggttttcaatgaaaaaattataatcatttatgggatgattcccatattgtggtttttagataattatagtcacctactaagcatgag |
127 |
Q |
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| T |
33415617 |
atcaatcatttgtggttttcaatgaaaaaattataatcatttatgggatgattcccatattgtggtttttagataattatagtcacctactaagcatgag |
33415716 |
T |
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| Q |
128 |
tacttgaaaaaatgaagtatttgtatcaaatacacgaatttgagacatattgaggtttttctttattctctgttgtaagtgaaatttgtgac-ttatgat |
226 |
Q |
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| T |
33415717 |
tacttgaaaaaatgaagtatttgtatcaaat--acgaatttgagacatattgaggtttttctttattctctgttgtaagtgaaatttgtgactttatgat |
33415814 |
T |
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| Q |
227 |
acataaacacaataatataatggtatttgtgtatttgagttttgctgttgtaagcaaaccacattttcttaaaa |
300 |
Q |
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| T |
33415815 |
agataaacacaataatataatggtatttgtgtatttgagttttgctgttgtaagaaagccacattttcttaaaa |
33415888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 104 - 217
Target Start/End: Original strand, 33410270 - 33410386
Alignment:
| Q |
104 |
ttatagtcacctactaagcatgagtacttg-----aaaaaatgaagtatttgtatcaaatacacgaatttgagacatattgaggtttttctttattctct |
198 |
Q |
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| T |
33410270 |
ttatagtcacctactaagcatgagtacttggaaaaaaaaaacgaagcatttgtatcaaatac--gaatttgagacatattgaggtttttcttcattatcc |
33410367 |
T |
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| Q |
199 |
gttgtaagtgaaatttgtg |
217 |
Q |
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| T |
33410368 |
attgtaagtgaaatgtgtg |
33410386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 33400006 - 33400061
Alignment:
| Q |
84 |
atattgtggtttttagataattatagtcacctactaagcatgagtacttgaaaaaa |
139 |
Q |
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| T |
33400006 |
atattatggtttttaaataattacagtgacctactaagcatgagtacttggaaaaa |
33400061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 33397852 - 33397901
Alignment:
| Q |
52 |
aaaaaattataatcatttatgggatgattcccatattgtggtttttagat |
101 |
Q |
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|||||| |||||| ||||||||| ||||| ||||||||||||||||||| |
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| T |
33397852 |
aaaaaagtataataatttatggggtgatttgcatattgtggtttttagat |
33397901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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