View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_37 (Length: 343)
Name: NF20919_low_37
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 28860535 - 28860811
Alignment:
| Q |
11 |
catagggcatgcataagtataaggtcataggcataaaacaatttggaacaagttttatttctacggtggttaggtacgtatatgacagagaatgtattta |
110 |
Q |
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| T |
28860535 |
catagggcatgcataagtataaggtcataggcataaaacaatttggaacaagttttatttctacggtggttaggtacgtatatgacagagaatgtattta |
28860634 |
T |
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| Q |
111 |
gaggtgtatgtcattttaccaatcaacattatacaatttaagtgttcttgtgaaagaattgagttgttgagcattccatgtgagtctctctctnnnnnnn |
210 |
Q |
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|||||||||| |||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |
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| T |
28860635 |
gaggtgtatgccattttaccaatcaacattatataa------tgttcttg--------------tgttgagcattccatgtgagtctctctctaaaaaaa |
28860714 |
T |
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| Q |
211 |
gagtattcaatnnnnnnngagtattccatgtgagcatttgattacacttctgatatcaatggaaattgtgaaccttttagaatacattgtatttttt |
307 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28860715 |
gagtattcaataaaaaaagagtattccatgtgagcatttgattacacttctgatatcaatggaaattgtgaaccttttagaatgcattgtatttttt |
28860811 |
T |
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