View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20919_low_4 (Length: 644)

Name: NF20919_low_4
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20919_low_4
NF20919_low_4
[»] chr1 (9 HSPs)
chr1 (20-638)||(28495617-28496232)
chr1 (511-638)||(36989340-36989467)
chr1 (512-638)||(12804511-12804637)
chr1 (512-638)||(42287117-42287243)
chr1 (512-638)||(4160377-4160503)
chr1 (512-638)||(12774937-12775063)
chr1 (225-284)||(31641897-31641956)
chr1 (512-638)||(50788819-50788945)
chr1 (510-638)||(31644056-31644184)
[»] chr8 (4 HSPs)
chr8 (512-638)||(5788723-5788849)
chr8 (224-288)||(5787996-5788060)
chr8 (572-638)||(33186735-33186801)
chr8 (227-282)||(33186981-33187036)
[»] chr7 (2 HSPs)
chr7 (512-636)||(40749392-40749516)
chr7 (530-638)||(44150818-44150926)
[»] chr2 (3 HSPs)
chr2 (509-638)||(42898298-42898427)
chr2 (510-638)||(40040789-40040917)
chr2 (512-638)||(38895857-38895983)
[»] chr4 (2 HSPs)
chr4 (510-638)||(22085504-22085632)
chr4 (512-638)||(30518148-30518274)


Alignment Details
Target: chr1 (Bit Score: 593; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 20 - 638
Target Start/End: Original strand, 28495617 - 28496232
Alignment:
Q  20 ccataatcatagtgttgttattgtttccaattccattgaaatctacatgatgaaatccatgtgagccaaattgtggatgtggaattccacctatattttg 119  Q
    |||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28495617 ccataatcatagtgttttt---gtttccaattccattgaaatctacatgatgaaatccatgtgagccaaattgtggatgtggaattccacctatattttg 28495713  T
Q  120 aagtattccatgtgataaaccatgttctgaatgtgaatgtggattcatcatagcactaccttcttcattcttaaaatttagatttgttgttgtaactgaa 219  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28495714 aagtattccatgtgataaaccatgttgtgaatgtgaatgtggattcatcatagcactaccttcttcattcttaaaatttagatttgttgttgtaactgaa 28495813  T
Q  220 gttactcttgcactctcttctgccaatgcatcacaaaaggctctatgtgtaatgaaactatcctttctgttcaaaatatcaacactcttaagttaaaact 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28495814 gttactcttgcactctcttctgccaatgcatcacaaaaggctctatgtgtaatgaaactatcctttctgttcaaaatatcaacactcttaagttaaaact 28495913  T
Q  320 taaaattaaaccagacacataaaaatataatccattaaagaaagcattaaattcaaaacctaacactacatacatgattggaaaaacctcgtacatgtca 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28495914 taaaattaaaccagacacataaaaatataatccattaaagaaagcattaaattcaaaacctaacactacatacatgattggaaaaacctcgtacatgtca 28496013  T
Q  420 caaatatgaatatgaataaattatagaagcatttattgatttatcacagaaacaaaagattggtgaataaaaggagagtatattaaatattataccttga 519  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496014 caaatatgaatatgaataaattaaagaagcatttattgatttatcacagaaacaaaagattggtgaataaaaggagagtatattaaatattataccttga 28496113  T
Q  520 gaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaacatttttca 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496114 gaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaacatttttca 28496213  T
Q  620 catttccacttcttctcac 638  Q
    |||||||||||||||||||    
T  28496214 catttccacttcttctcac 28496232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 511 - 638
Target Start/End: Complemental strand, 36989467 - 36989340
Alignment:
Q  511 ataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaa 610  Q
    |||||| || |||| ||| |||||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||| || |||||||| || |||    
T  36989467 atacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaa 36989368  T
Q  611 catttttcacatttccacttcttctcac 638  Q
    || || |||||||||||||| |||||||    
T  36989367 cacttatcacatttccactttttctcac 36989340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 512 - 638
Target Start/End: Original strand, 12804511 - 12804637
Alignment:
Q  512 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 611  Q
    |||||||||||||| ||||||||||||||| | || || || |||||||| || || | ||||||||||||||||||||| || |||||||| || ||||    
T  12804511 taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 12804610  T
Q  612 atttttcacatttccacttcttctcac 638  Q
    | ||||||||||||||||| |||||||    
T  12804611 acttttcacatttccactttttctcac 12804637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 512 - 638
Target Start/End: Complemental strand, 42287243 - 42287117
Alignment:
Q  512 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 611  Q
    ||||| ||||||||||||||||| |||||| | |||||||| |||||||| || || | ||| |||||||| |||||||| || |||||||| || || |    
T  42287243 tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgagc 42287144  T
Q  612 atttttcacatttccacttcttctcac 638  Q
    |||||||||||||||||||||||||||    
T  42287143 atttttcacatttccacttcttctcac 42287117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 512 - 638
Target Start/End: Complemental strand, 4160503 - 4160377
Alignment:
Q  512 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 611  Q
    ||||||||||||||||| ||||||||||| || || ||| | || |||||  |||| | ||||||||||||||| || || |||||||||  ||| ||||    
T  4160503 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 4160404  T
Q  612 atttttcacatttccacttcttctcac 638  Q
    |||| ||||| ||||||||||||||||    
T  4160403 atttctcacacttccacttcttctcac 4160377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 512 - 638
Target Start/End: Complemental strand, 12775063 - 12774937
Alignment:
Q  512 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 611  Q
    ||||| |||||||| ||||||||||||||| | || ||  | |||||||| ||||| | ||||||||||||||||||||| || ||||| || || ||||    
T  12775063 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaac 12774964  T
Q  612 atttttcacatttccacttcttctcac 638  Q
    | |||||||| ||||| || |||||||    
T  12774963 acttttcacacttccattttttctcac 12774937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 31641897 - 31641956
Alignment:
Q  225 tcttgcactctcttctgccaatgcatcacaaaaggctctatgtgtaatgaaactatcctt 284  Q
    ||||||||| ||||| ||||||||||||||||| |||||||| || ||||| ||||||||    
T  31641897 tcttgcactttcttcagccaatgcatcacaaaatgctctatgagttatgaagctatcctt 31641956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 512 - 638
Target Start/End: Original strand, 50788819 - 50788945
Alignment:
Q  512 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 611  Q
    ||||| |||||||| ||||||||||||||  | |||||||| || ||||| || || | ||| || |||||||||||||| || ||||| || || || |    
T  50788819 tacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagagc 50788918  T
Q  612 atttttcacatttccacttcttctcac 638  Q
    | || ||||| ||||| ||||||||||    
T  50788919 acttatcacacttccatttcttctcac 50788945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 510 - 638
Target Start/End: Original strand, 31644056 - 31644184
Alignment:
Q  510 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 609  Q
    ||||||| || || ||||| ||||| |||||||| |||||||  |||||||| ||||| |  ||||||||||||||||| || || |||||  | || ||    
T  31644056 tatacctggaaaaaagggtaccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttga 31644155  T
Q  610 acatttttcacatttccacttcttctcac 638  Q
     || || ||||||||||| || |||||||    
T  31644156 gcacttatcacatttccattttttctcac 31644184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 512 - 638
Target Start/End: Original strand, 5788723 - 5788849
Alignment:
Q  512 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 611  Q
    ||||||||||||||||| |||||||||||| | |||||||| || ||||| ||||| | ||||||||||||||||||||| || |||||||| || ||||    
T  5788723 taccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaac 5788822  T
Q  612 atttttcacatttccacttcttctcac 638  Q
    | |||||||||||||||||||||||||    
T  5788823 acttttcacatttccacttcttctcac 5788849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 5787996 - 5788060
Alignment:
Q  224 ctcttgcactctcttctgccaatgcatcacaaaaggctctatgtgtaatgaaactatcctttctg 288  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||| |||||    
T  5787996 ctcttgcactctcttctgctaatgcatcacaaaatgctctatgtgttatgaaactgtcccttctg 5788060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 572 - 638
Target Start/End: Complemental strand, 33186801 - 33186735
Alignment:
Q  572 tgagctttccaatcagattggactgcatattttttggaacatttttcacatttccacttcttctcac 638  Q
    |||||||||||||||||||| || |||||||| || |||||||| |||||||||||||| |||||||    
T  33186801 tgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccactttttctcac 33186735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 33187036 - 33186981
Alignment:
Q  227 ttgcactctcttctgccaatgcatcacaaaaggctctatgtgtaatgaaactatcc 282  Q
    ||||| |||| |||||||| ||||||||||| ||||||||||| || |||||||||    
T  33187036 ttgcattctcctctgccaacgcatcacaaaaagctctatgtgtgataaaactatcc 33186981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 512 - 636
Target Start/End: Complemental strand, 40749516 - 40749392
Alignment:
Q  512 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 611  Q
    |||||||||||||| || ||||| ||||| || |||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||    
T  40749516 taccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaac 40749417  T
Q  612 atttttcacatttccacttcttctc 636  Q
    | || ||||| ||||| ||||||||    
T  40749416 acttatcacacttccatttcttctc 40749392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 638
Target Start/End: Original strand, 44150818 - 44150926
Alignment:
Q  530 ccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaacatttttcacatttccact 629  Q
    ||||| |||||||||||||| || |||||||| |||||    ||||| |||||||| ||||| || |||||| |||| || || || ||||||||||| |    
T  44150818 ccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagcacttgtcacatttccatt 44150917  T
Q  630 tcttctcac 638  Q
    |||||||||    
T  44150918 tcttctcac 44150926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 8e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 509 - 638
Target Start/End: Complemental strand, 42898427 - 42898298
Alignment:
Q  509 ttataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgg 608  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||| |  ||||||||||| || ||||| |||||||| || || |    
T  42898427 ttataccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttag 42898328  T
Q  609 aacatttttcacatttccacttcttctcac 638  Q
    | || || ||||||||||||||||||||||    
T  42898327 agcacttgtcacatttccacttcttctcac 42898298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 510 - 638
Target Start/End: Complemental strand, 40040917 - 40040789
Alignment:
Q  510 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 609  Q
    ||||||| ||||| || |||||||| |||||| |||| ||| | || |||||  | ||  ||||||| |||||||||||||| ||||||||||| || ||    
T  40040917 tatacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatcttactatgagccttccaatcagattgaactgcatatttcttaga 40040818  T
Q  610 acatttttcacatttccacttcttctcac 638  Q
    ||| || ||||| ||||||||||||||||    
T  40040817 acacttatcacacttccacttcttctcac 40040789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 512 - 638
Target Start/End: Original strand, 38895857 - 38895983
Alignment:
Q  512 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 611  Q
    |||||||| ||||  |||||||| ||||||||||||||||| |||||||| || ||||  || ||||||||||| ||||| || |||||   ||| || |    
T  38895857 taccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagc 38895956  T
Q  612 atttttcacatttccacttcttctcac 638  Q
    | || ||||| ||||||||||||||||    
T  38895957 acttctcacacttccacttcttctcac 38895983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 510 - 638
Target Start/End: Original strand, 22085504 - 22085632
Alignment:
Q  510 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 609  Q
    ||||||| ||||| |  |||||||| ||||||||||| ||||| || |||||  | ||  |||||||||||||||||||||| ||||||||||| |||||    
T  22085504 tatacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttgga 22085603  T
Q  610 acatttttcacatttccacttcttctcac 638  Q
    ||| |||||||| ||||||||||||||||    
T  22085604 acacttttcacacttccacttcttctcac 22085632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 512 - 638
Target Start/End: Original strand, 30518148 - 30518274
Alignment:
Q  512 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 611  Q
    |||||||| ||||  || ||||||||||||||||||||||| ||||||||||||||||  |||||||||||||| || || || |||||   ||| || |    
T  30518148 taccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagc 30518247  T
Q  612 atttttcacatttccacttcttctcac 638  Q
    | || ||||| ||||||||||| ||||    
T  30518248 acttctcacacttccacttcttttcac 30518274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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