View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_44 (Length: 291)
Name: NF20919_low_44
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 38626070 - 38626332
Alignment:
| Q |
10 |
acatcatcaaaaccagctaatatctttgtgaatttagcacgaacaatgcctttctgcaaacatgacacaccccaaaaatcaagttgcctgtaagtataag |
109 |
Q |
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| T |
38626070 |
acatcatcaaaaccagctaatatctttgtgaatttagcacgaacaatgcctttctgcaaacatgacacaccccaaaaatcaagttgcctgtaagtataag |
38626169 |
T |
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| Q |
110 |
gaggtcagcattattccttcaattaaatctcatcaacataaatacatacatccttacggtgtgtcccccctctgnnnnnnngcagtgtggtgcgagactc |
209 |
Q |
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| T |
38626170 |
gaagtcagcattattccttcaattaaatctcatcaacataaatacatacatccttacggtgtgtcccccctctgaaaaaaagcagtgtggtgcgagactc |
38626269 |
T |
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| Q |
210 |
aaacggatcatgaggctcatcatctacataagaatctacgaaatgtacatatggggacactac |
272 |
Q |
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| T |
38626270 |
aaacggatcatgaggctcatcatctacataagaatctacgaaatgtacatatggggacactac |
38626332 |
T |
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