View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20919_low_46 (Length: 286)

Name: NF20919_low_46
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20919_low_46
NF20919_low_46
[»] chr6 (1 HSPs)
chr6 (30-279)||(3827222-3827498)
[»] chr5 (4 HSPs)
chr5 (147-279)||(30764189-30764321)
chr5 (143-279)||(30761368-30761506)
chr5 (112-145)||(30761520-30761553)
chr5 (112-145)||(30764339-30764372)
[»] chr3 (1 HSPs)
chr3 (173-279)||(44508185-44508303)
[»] chr7 (1 HSPs)
chr7 (187-279)||(5827337-5827440)
[»] chr2 (2 HSPs)
chr2 (185-244)||(11059242-11059301)
chr2 (29-94)||(23674089-23674154)
[»] chr4 (1 HSPs)
chr4 (22-92)||(26060057-26060127)


Alignment Details
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 30 - 279
Target Start/End: Original strand, 3827222 - 3827498
Alignment:
Q  30 aataaacagcatagaaccaaagagaaattcatcgataccgcagtagcttatcaaatccttatcccaggtgttttgccgttttttgcttcttgttgtgcag 129  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3827222 aataaacaacatagaaccaaagagaaattcatcgataccgcagtagcttatcaaatccttatcccaggttttttgccgttttttgcttcttgttgtgcag 3827321  T
Q  130 tccgtagccttct----------------ttccgttccaaaactcttgatcccaaaacagtgattgcaccgaacgtgaattgatgttcttgtgctgtgcg 213  Q
    |||||||||||||                ||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||    
T  3827322 tccgtagccttctttctatctccttgtccttccgttccaaaactcttgatcccaaaacggtgattgcacagaacgtgaatagatgttcttgtgctgtgcg 3827421  T
Q  214 gcttcttttatatatgtgttgtaacctagt-----------tcccacaagcatgttacgtttttattttcctttgct 279  Q
    |||||||||||||| || ||||||||||||           |||||||||| |||||||||||||||||||||||||    
T  3827422 gcttcttttatataagttttgtaacctagttgccttccttctcccacaagcctgttacgtttttattttcctttgct 3827498  T

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Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 147 - 279
Target Start/End: Complemental strand, 30764321 - 30764189
Alignment:
Q  147 gttccaaaactcttgatcccaaaacagtgattgcaccgaacgtgaattgatgttcttgtgctgtgcggcttcttttatatatgtgttgtaacctagttcc 246  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  30764321 gttccaaaactcttgatcccaaaacggtgattgcaccgaacgtgaatggatgttcttgtgctgtgcggcttcttttatataagtgttgtaacctagctcc 30764222  T
Q  247 cacaagcatgttacgtttttattttcctttgct 279  Q
    |||||||||||||||||||||||||||||||||    
T  30764221 cacaagcatgttacgtttttattttcctttgct 30764189  T

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Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 143 - 279
Target Start/End: Complemental strand, 30761506 - 30761368
Alignment:
Q  143 ttccgttccaaaactcttgatcccaaaacagtgattgcaccgaacgtgaattgatgttcttgtgctgtgcggcttcttttatatatgtgt--tgtaacct 240  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||  ||||||||    
T  30761506 ttccgttccaaaactcttgatcccaaaacggtgattgcaccgaacgtgaatggatgttcttgtgctgtgcggcttcttttatataagtgttgtgtaacct 30761407  T
Q  241 agttcccacaagcatgttacgtttttattttcctttgct 279  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30761406 agttcccacaagcatgttacgtttttattttcctttgct 30761368  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 30761553 - 30761520
Alignment:
Q  112 ttgcttcttgttgtgcagtccgtagccttctttc 145  Q
    ||||||||||||||||||||||||||||||||||    
T  30761553 ttgcttcttgttgtgcagtccgtagccttctttc 30761520  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 30764372 - 30764339
Alignment:
Q  112 ttgcttcttgttgtgcagtccgtagccttctttc 145  Q
    ||||||||||||||||||||||||||||||||||    
T  30764372 ttgcttcttgttgtgcagtccgtagccttctttc 30764339  T

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Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 173 - 279
Target Start/End: Complemental strand, 44508303 - 44508185
Alignment:
Q  173 gtgattgcaccgaacgtgaattgatgttcttgtgctg-tgcggcttcttttatatatgtgttgtaacctagt-----------tcccacaagcatgttac 260  Q
    ||||||||||  ||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||           |||||||||||||||||    
T  44508303 gtgattgcacaaaacgtgaattgatcttcttgtgctggtgcggcttcttttatataagtgttgtaacctagttgccttccttctcccacaagcatgttac 44508204  T
Q  261 gtttttattttcctttgct 279  Q
    |||||||||||||||||||    
T  44508203 gtttttattttcctttgct 44508185  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 187 - 279
Target Start/End: Original strand, 5827337 - 5827440
Alignment:
Q  187 cgtgaattgatgttcttgtgctgtgcggcttcttttatatatgtgttgtaacctagt-----------tcccacaagcatgttacgtttttattttcctt 275  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||           || |||||||||||||||||||||||||||||    
T  5827337 cgtgaatggatgttcttgtgctgtgcggcttcttttatataagtgttgtaacctagttgccttccttctctcacaagcatgttacgtttttattttcctt 5827436  T
Q  276 tgct 279  Q
    ||||    
T  5827437 tgct 5827440  T

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Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 11059301 - 11059242
Alignment:
Q  185 aacgtgaattgatgttcttgtgctgtgcggcttcttttatatatgtgttgtaacctagtt 244  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11059301 aacgtgaatggatgttcttgtgctgtgcggcttcttttatataagtgttgtaacctagtt 11059242  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 23674089 - 23674154
Alignment:
Q  29 aaataaacagcatagaaccaaagagaaattcatcgataccgcagtagcttatcaaatccttatccc 94  Q
    ||||||||| |||| |||||||||||||||||||||||||||  ||||||||||||| ||| ||||    
T  23674089 aaataaacaacataaaaccaaagagaaattcatcgataccgcgatagcttatcaaattcttttccc 23674154  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 26060127 - 26060057
Alignment:
Q  22 ttaaagaaaataaacagcatagaaccaaagagaaattcatcgataccgcagtagcttatcaaatccttatc 92  Q
    |||||||||||||||| | |||||| |||||||||||||| ||||||  | ||| ||||||||| ||||||    
T  26060127 ttaaagaaaataaacaacgtagaacaaaagagaaattcattgataccataatagtttatcaaattcttatc 26060057  T

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