View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_48 (Length: 283)
Name: NF20919_low_48
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 8398237 - 8397960
Alignment:
| Q |
1 |
caataaaggcaccatttaatatttattggcgtaataggttcacgttcgacttattgagcatgaaattttctcttatttagtcaacacatgtaacttgttg |
100 |
Q |
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| T |
8398237 |
caataaaggcaccatttaatatttattgctgtaataggttcacgttcgacttattgagcatgaaattttctcttatttatttaatacatgtaacttgttg |
8398138 |
T |
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| Q |
101 |
cagcgaatgtcaaatggtaacgagcatgaagcatctagatgtatcaagacacagtttcttattgaaatggaaggctttgacggtggtgatgagcaagtct |
200 |
Q |
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||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
8398137 |
cagagaatgtcaaatggtaatgagcatgaagcatctagacgtatcaagacacagtttcttattgaaatggaaggctttgacggtggtgacgaccaagtct |
8398038 |
T |
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| Q |
201 |
tggttattggtaattgttgagcaatacactcaatttctttttacttttctttctaatataacttaattttcatctcact |
279 |
Q |
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| T |
8398037 |
tggttattggtaattgttgagcaacacactcaatttctttttacttttctctctaatat-acttcattttcatctcact |
8397960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 241
Target Start/End: Complemental strand, 8392922 - 8392794
Alignment:
| Q |
113 |
aatggtaacgagcatgaagcatctagatgtatcaagacacagtttcttattgaaatggaaggctttgacggtggtgatgagcaagtcttggttattggta |
212 |
Q |
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|||| ||| ||||||||| | ||||| |||| |||||||| ||| |||||||||||||| ||||| ||||||| | ||||||||| |||||||||||| |
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| T |
8392922 |
aatgataatgagcatgaaataactagacgtatgaagacacaattttttattgaaatggaaagcttttccggtggtaacgagcaagtcctggttattggta |
8392823 |
T |
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| Q |
213 |
attgttgagcaatacactcaatttctttt |
241 |
Q |
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| T |
8392822 |
attgttgtgcaatacgctcaatttctttt |
8392794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 8424390 - 8424503
Alignment:
| Q |
146 |
aagacacagtttcttattgaaatggaaggctttgacggtggtgatgagcaagtcttggttattggtaattgttgag-caatacactcaatttctttttac |
244 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| | ||| |||| || |||| ||||||||||||| || || |||||||||||||||| |
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| T |
8424390 |
aagacacagtttcttattgaaatggaaggctttgacagtggtaacgagaaagttctgcttataggtaattgttgagccactaggctcaatttctttttac |
8424489 |
T |
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| Q |
245 |
ttttctttctaata |
258 |
Q |
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|||||||| ||||| |
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| T |
8424490 |
ttttctttttaata |
8424503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 8409094 - 8409168
Alignment:
| Q |
141 |
gtatcaagacacagtttcttattgaaatggaaggctttgacggtggtgatgagcaagtcttggttattggtaatt |
215 |
Q |
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|||| |||||||| ||||||||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||| |
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| T |
8409094 |
gtataaagacacaatttcttattgaaatggaaggctttgccggtggtaacgagcaagtcctggttattggtaatt |
8409168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 8390170 - 8390129
Alignment:
| Q |
146 |
aagacacagtttcttattgaaatggaaggctttgacggtggt |
187 |
Q |
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| T |
8390170 |
aagacacagtttcttattgaaatggaaggctttgacagtggt |
8390129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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