View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_49 (Length: 278)
Name: NF20919_low_49
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 38626092 - 38625823
Alignment:
| Q |
1 |
atattagctggttttgatgatgttcactatgaaagaagttctgctacaggagaaaacataaaattggtatgaagtaagttatgcatgatgtttataactt |
100 |
Q |
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| T |
38626092 |
atattagctggttttgatgatgttcactatgaaagaagttctgctacaggagaaaacataaaattggtatgaagtaagttatgcatgatgtttataactt |
38625993 |
T |
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| Q |
101 |
ctattgtttttactttgattcaaatactgggattctatttgttttcaatgatcaaaatgaaatgtttttgaatcgtaagaacatgcttcattatattttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38625992 |
ctattgtttttactttgattcaaatactgggattctatttgttttcaatgatcaaaatgaaatgtttttgaatcgtaagaacatgcttcattatattttc |
38625893 |
T |
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| Q |
201 |
agctaatactaccacttctgtaaagaaaatttcttacttgtatgtcctagcattagacggttcctttgct |
270 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38625892 |
agctaatactgccacttctgtaaagaaaatttcttacttgtatgtcctagcattagacggttcctttgct |
38625823 |
T |
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