View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_5 (Length: 622)
Name: NF20919_low_5
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 495; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 13 - 539
Target Start/End: Original strand, 42443975 - 42444501
Alignment:
| Q |
13 |
tgaacagtagaattagctaaaatatacccaaatttatcaaaccctcgtattaccttatgcacttataaagggcaaactgtatgttattttccggttgatt |
112 |
Q |
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| T |
42443975 |
tgaacagtagaattagctaaaatatacccaaatttatcaaaccctcgtattaccttatgcacttataaagggcaaactgtatgttattttccggttgatt |
42444074 |
T |
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| Q |
113 |
ttattatatttgactcttaatttgattgacctaactagcttcagatttgattctatttttgttatggattagtcagtgacgtattgtttgatgtcagctt |
212 |
Q |
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| T |
42444075 |
ttattatatttgactcttaatttgattgacctaactagcttcagatttgattctatttttgttatggattagtcagtaacgtattgtttgatgtcagctt |
42444174 |
T |
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| Q |
213 |
tctgtaaggaactgcttcatcagaggatcggtggtgagatacgtgcaattgccgccagaaggggtggacatcgaactattgcacgatgccacaaggagag |
312 |
Q |
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| T |
42444175 |
tctgtaaggaactgcttcatcagaggatcggtggtgagatacgtgcaattgccgccagaaggggtggacatcgaactattgcacgatgccacaaggagag |
42444274 |
T |
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| Q |
313 |
aagcccggggtggttgattttgttattgttgtaatgcatcttctgtatgagaatttattaggctggaatatcatatacgttatcgttcctgctgaagaaa |
412 |
Q |
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| T |
42444275 |
aagcccggggtggttgattttgctattgttgtaatgtatcttctgtatgagaattcattaggctggaatatcatatacgatatcgttcctgcttaagaaa |
42444374 |
T |
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| Q |
413 |
gaaactattatgaactgtcatgaattttattgcgtctatgtacaagagattatatttgatgtgcgtacacagaaatattggatgataaaaaattccattg |
512 |
Q |
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| T |
42444375 |
gaaactattatgaactgtcatgaattttattgcgtctatgtataagagattatatttgatgtgcgtacacagaaatactggatgataaaaaattccattg |
42444474 |
T |
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| Q |
513 |
tgcaagaagaatatattccaacatgtg |
539 |
Q |
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| T |
42444475 |
tgcaagaagaatatattccaacatgtg |
42444501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 87 - 422
Target Start/End: Original strand, 37618897 - 37619241
Alignment:
| Q |
87 |
aactgtatgttattttccggttgattttattatatttgactct--taatttgattga-----cctaactagcttcagatttgattctatttttgttatgg |
179 |
Q |
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||||||||||| ||||||| |||||||| ||||||||| |||| | |||||||||| ||||||| ||||||||||||||| |||||| | | |
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| T |
37618897 |
aactgtatgttgttttccgtttgattttgttatatttggctctctttatttgattgatcagacctaacttgcttcagatttgattgtattttaatcgttc |
37618996 |
T |
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| Q |
180 |
attagtcagtgacgt---attgtttgatgtcagctttctgtaaggaactgcttcatcagaggatcggtggtgagatacgtgcaattgccgccagaagggg |
276 |
Q |
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| T |
37618997 |
attagtctgtaacatgtcattgtttgatttcagctttctgtaaggaactgcttcatcagaggatcagtggtgagatacgtacaattgcctccagaaggtg |
37619096 |
T |
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| Q |
277 |
tggacatcgaactattgcacgatgccacaaggagagaagcccggggtggttgattttgttattgttgtaatgcatcttctgtatgagaatttattaggct |
376 |
Q |
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| T |
37619097 |
tggacattgaactgttgcatgatgccacaaggagagaagcccggggtggttga-tttgttaatcttgtaatgtatctt-ggtatgagaattcgatcggct |
37619194 |
T |
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| Q |
377 |
ggaatatcatatacgttatcgttcctgctgaaga-aagaaactatta |
422 |
Q |
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||||||||||| | |||||| |||||||| |||| |||||||||||| |
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| T |
37619195 |
ggaatatcatagatgttatcattcctgcttaagagaagaaactatta |
37619241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 539 - 605
Target Start/End: Original strand, 42444631 - 42444697
Alignment:
| Q |
539 |
gtacatatgattgatgatgataccagtggcatttctgaaccagcaaatgctgaacggtgacgaaagt |
605 |
Q |
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| T |
42444631 |
gtacatatgattgatgatgataccagtggcatttctgaaccagcaaatgctgaacggtgacgaaagt |
42444697 |
T |
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Back To:
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